BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896906
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29375.1 | Symbols: | XH domain-containing protein | chr3:1... 896 0.0
AT1G80790.1 | Symbols: | XH/XS domain-containing protein | chr... 257 9e-68
> AT3G29375.1 | Symbols: | XH domain-containing protein | chr3:11280151-11281894
FORWARD LENGTH=1133
Length=1133
Score = 896 bits (485), Expect = 0.0
Identities = 608/667 (91%), Gaps = 10/667 (1%)
Strand=Plus/Plus
Query 125 TTATTGTCGTGGAGGCGG-ATACTGAGTTACAAGAGCCTTCATGGAGATCCCTGAAACAG 183
||||| ||||||||| || ||| ||||| |||||||| | |||||||||| ||||||||
Sbjct 407 TTATTCTCGTGGAGG-GGAATAATGAGTCACAAGAGCATAAATGGAGATCCATGAAACAG 465
Query 184 GAAAATGAAGAGCTCaaaaaaaGATTGAAGGAGATGGAGGAGGAGTTAGAGGATAAGGAT 243
|||||||||||||||||||||||||||| || |||| | |||||| ||||||||||||||
Sbjct 466 GAAAATGAAGAGCTCAAAAAAAGATTGAGGGTGATGAAAGAGGAGCTAGAGGATAAGGAT 525
Query 244 TCTGACTTAGAACAACGAG-AGGCTTTGATTAGTGCCCTCTTGGTGAAAGAACGCTATAG 302
||||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||| |
Sbjct 526 TCTGAGTTAGAACAACGAGAAGG-TTTGATTAATGCCCTCTTGGTGAAAGAACGCTAT-G 583
Query 303 -CAATGATGAGATACAAGAAGCAC-GCAAACTATTGATCAGTGAACTGAGAGATTTAACA 360
|||||||||||||| ||||||| | ||||| ||||||||| || |||||||||||||
Sbjct 584 CCAATGATGAGATACTTGAAGCACAG-AAACTGTTGATCAGTCAAATGAGAGATTTAACG 642
Query 361 GATGATAGATCGAAGATCAGAGTAAAGAGGATGGGAGATCTTGATGTAGAGCCCTTCGTA 420
||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 643 GATGATAGAACGACGATCAGAGTAAAGAGGATGGGACATCTTGATGTAGAGCCCTTCGTA 702
Query 421 AAAGCAAGTAAGCGGAGATTAACTGGCGAA-AACATTAAGCTTTACACGAAATGGGAAGA 479
||||||||||||||||||||||||||| || ||| | || ||||| || ||||||||||
Sbjct 703 AAAGCAAGTAAGCGGAGATTAACTGGC-AACGACACTGAGGTTTACGCGGAATGGGAAGA 761
Query 480 AAACCTCAGGGATCCACATTGGCAACCATTCAAATGGGTGGAGACCGGAAACGGAGTGAA 539
||||||||||||||| |||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 762 AAACCTCAGGGATCCTCATTGGCAACCATTCAAACGGGTGGAGACTGGAAACATAGTGAA 821
Query 540 GGAAGTGGTGGATGAAGAAGATGAGAAACTTAAGAATCTCAGAGAAAAGTGGGGAGAAGA 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 822 GGAAGTGGTGGATGAAGAAGATGAGAAACTTAAGAATCTCAGAGAAGAGTGGGGAGAAGA 881
Query 600 GGTGACGAACGCAGTTAAGACGGCTCTCGAAGAAGTTAACGAGTTTAATCCAAGTGGCCG 659
||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 882 GGTGATGAACGCAGTAAAGACGGCTCTCGAAGAAGTTAACGAGTTTAACCCAAGTGGCCG 941
Query 660 GCATGTAGTCCCAGCACTGTGGAATTCCGTACAAGGAAGAACAGCTACATTGAGAGAAGC 719
|||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 942 ACATGTAGTCCCAACACTGTGGAATTCCGAACAAGGAAGAGTAGCTACATTGAGAGAAGT 1001
Query 720 GATTGCTGACATGACCCGTGAGATCAAAACTCTCAAACGGAAAAAGAATTTGAAACACCG 779
||||||| ||||||| | ||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1002 GATTGCTCACATGACACATGAGATCAAAACTCTTAAACGGAAAAAGAATCTGAAACACCG 1061
Query 780 TAAGTAA 786
|||||||
Sbjct 1062 TAAGTAA 1068
> AT1G80790.1 | Symbols: | XH/XS domain-containing protein | chr1:30359723-30363307
FORWARD LENGTH=2314
Length=2314
Score = 257 bits (139), Expect = 9e-68
Identities = 441/581 (76%), Gaps = 44/581 (8%)
Strand=Plus/Plus
Query 209 TGAAGGAGATGGAGGAGGAGTTAGAGGATAAG-GATTCTGACTTAGAACAACGAGAGGCT 267
||||| ||||| |||| ||| ||||||| ||| | |||||| ||| || | | ||||| |
Sbjct 1512 TGAAGAAGATGAAGGAAGAGCTAGAGGAAAAGTG-TTCTGAGTTACAAGATCTAGAGGAT 1570
Query 268 -TTGATTAGTGCCCTCTTGGTGAAAGAACGCT-ATAGCAATGATGAGATACAAGAAGCAC 325
| | | | || ||| |||| |||||||| | | ||||||||||||||| ||||||||
Sbjct 1571 ACTAACTCG-GCTCTCATGGTAAAAGAACG-TAAAAGCAATGATGAGATAGTAGAAGCAC 1628
Query 326 GCAAACTATTGATCA-GTGAACTGAGAG-ATTTAACAGATGATAG-ATCGAAGATCAGAG 382
||||| | ||||| | | ||| |||||| ||| || |||| | | | | ||||| |
Sbjct 1629 GCAAATTTTTGATTACG-GAATTGAGAGAATTGGTGAG-TGATCGAAAC-ATCATCAGGG 1685
Query 383 TAAAGAGGATGGGAGATCTTGATGTAGAGCCCTTCGTAAAAGCAAGTAAGCGGAGAT-TA 441
|||||||||||||||| ||||| | | |||||||| | | |||| | | || ||||| |
Sbjct 1686 TAAAGAGGATGGGAGAACTTGAGGAAAAGCCCTTCATGACAGCATGCAGGCAGAGATGCA 1745
Query 442 -A-CTGGCGAA-AA---CA--T----TA----A-GCTTTACACGAAATGGGAAGAAAACC 484
| || ||| || || | || | ||||| | |||||||| | |||||
Sbjct 1746 CAGTTGAAGAAGAAGCTCAGGTGCAGTATGCCATGCTTTGCTCGAAATGGCAGGAAAAGG 1805
Query 485 TCAGGGATCCA-CATTGGCAACCATTCAAATGGGTGGAGACCGGAAACGGAGTGAAGGAA 543
||| |||| || | ||||| ||||||||| |||| ||| ||| || || |||||||
Sbjct 1806 TCAAGGATTCAGC-GTGGCAGCCATTCAAACATGTGGGGACTGGAGACAGAAAGAAGGAA 1864
Query 544 GTGGTGGATGAAGAAGATGAG-AAACTTAAGAATCTCAGAGAAAAGTGGGGAGAAGAGGT 602
||||||||||||||||||||| ||| | ||||| || |||||| ||||||||||||| ||
Sbjct 1865 GTGGTGGATGAAGAAGATGAGGAAA-TAAAGAAACTGAGAGAAGAGTGGGGAGAAGAAGT 1923
Query 603 GACGAACGCAGTTAAGACGGCTCTCGAAGAAG-TTAACGAGTTTAATCCAAGTGGCCGGC 661
|| ||| ||||||||||| || || || || | |||| ||||||||||| ||||| || |
Sbjct 1924 GAAGAATGCAGTTAAGACAGCACTGGAGGA-GCTTAATGAGTTTAATCCTAGTGGGCG-C 1981
Query 662 -A-TGTAGTCCCAGCACTGTGGAATTCCGTA-CAAGGAAGAACAGCTACATTGAGAGAAG 718
| | |||||||| ||||||||||||| | |||||||||| ||| ||| ||| |||||
Sbjct 1982 TACTC-AGTCCCAGAACTGTGGAATTCCA-AGCAAGGAAGAAAAGCCACACTGAAAGAAG 2039
Query 719 CGATTGCTGACATGACCC-GTGAGATCAAAACTCTCAAACG 758
||||| | |||| || | | || ||||||||||||||||
Sbjct 2040 TGATTGATTACATTACGCAGC-AGGTCAAAACTCTCAAACG 2079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5