BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896908
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29385.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 586 1e-166
> AT3G29385.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: dentin sialophosphoprotein-related (TAIR:AT5G07980.1);
Has 74 Blast hits to 74 proteins in 11 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11284395-11285402
REVERSE LENGTH=657
Length=657
Score = 586 bits (317), Expect = 1e-166
Identities = 454/519 (87%), Gaps = 13/519 (3%)
Strand=Plus/Plus
Query 297 TGATAAGGTCGGTCCAAATGAGGCGAAATCTCCTTCAGAGAGGAGGCTTGTTTTATCCAC 356
||| ||||||| | |||||||||||| |||||| ||| |||| |||||| ||| ||| ||
Sbjct 144 TGAGAAGGTCGATACAAATGAGGCGATATCTCCATCAAAGAGAAGGCTTCTTTCATCTAC 203
Query 357 ACATCTTATGCAACAGCTTCTCCAACCAGCACCAGCGTTTGTTTTCTTGGGCGAAAACGC 416
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 204 ACATCTTATGCAACAGCTTCTCCAACCAGCACCAACGTTTGTTTTCTTGGGCGACAACGC 263
Query 417 AGCTCTCAACTACGAAATCGTGCTTTACTTTATGTCAAGATTGACCCTCGCTGATTCATG 476
|||||| |||||||||||||||||||||| | |||| ||| | | ||||||| |||||||
Sbjct 264 AGCTCTTAACTACGAAATCGTGCTTTACTATGTGTCGAGAATCAACCTCGCTAATTCATG 323
Query 477 TTCTCTCAAATGTCGATCGGATTTGGAGAAGAGCAGAAATCGTCAAACTTCGAAGACAGC 536
|||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 324 TTCTCTAAAATGTCGCTCGGATTTGGATAAGAGCATAAATCGTCAAACTTCGAAGACAGC 383
Query 537 TAGTGATCAA---CAGTT---TTCTTCACTCGTTAATGCTTCCA-TGGAGAAAATTCATA 589
|||| ||||| ||| ||||| ||| || ||||||| || || ||||||| || |
Sbjct 384 TAGTAATCAAGATCAGCAACATTCTTTACTTGTCAATGCTTTCAATG-AGAAAATACAGA 442
Query 590 AGCTTGAAAGTGACTTCCAGAGCTTGGAGAGGACTACTACATCGATATTAGACATCATCT 649
|||||||||| ||||||| || || ||||||||||| | || ||||||||||||||||
Sbjct 443 AGCTTGAAAGCAACTTCCAAAGTTTAGAGAGGACTAC-A--TCAATATTAGACATCATCT 499
Query 650 TCGAAATCCAAGACCTCGAAAGATTCTCCGTGATAAACCATCTCGGCAAGTTTCATAACC 709
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 500 TTGAAATCCAAGACCTCGAAAGATTCTCTATGATAAACCATCTCGGCAAGTTTCATAACC 559
Query 710 GCGCAAAGACCATTACAAGACCTAATCCGCAGAGATACGTTGTTG-GAATACAAATGCCA 768
||||||||||| ||| ||||| || |||||| | ||||| ||||| || |||||||||||
Sbjct 560 GCGCAAAGACCTTTAAAAGACTTATTCCGCATAAATACGCTGTTGCGA-TACAAATGCCA 618
Query 769 ACGAACCTGCCCGAGCCACTACATTGTCTTCCTCTGTGA 807
| |||||| || |||||||||||||||||||||||||||
Sbjct 619 ATGAACCTACCAGAGCCACTACATTGTCTTCCTCTGTGA 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39283102954
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5