BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896909

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52618.1 | Symbols:  | unknown protein; Has 6 Blast hits to ...   165    2e-40


> AT1G52618.1 | Symbols:  | unknown protein; Has 6 Blast hits to 
6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 
0 (source: NCBI BLink). | chr1:19603147-19603662 FORWARD LENGTH=516
Length=516

 Score =  165 bits (89),  Expect = 2e-40
 Identities = 137/160 (86%), Gaps = 3/160 (2%)
 Strand=Plus/Minus

Query  100  GATTGCTCGGTCAGGATCTATCGACGTGGAGCCGATCAGTCGGAGAGTCGAGTTTTCTGG  159
            ||||||| ||||||||||||||| ||| |||||| | |||||||||||||||||||||||
Sbjct  352  GATTGCTTGGTCAGGATCTATCGTCGTAGAGCCGGTGAGTCGGAGAGTCGAGTTTTCTGG  293

Query  160  GAGGTTTGTAGCGGGATTGGCGAGTCGGCGGTGAGGATGCTTCGTCGGAAACCGAATTCT  219
            ||||||||| ||||| |||| |||||| |||||||| ||| ||||||||||  |  ||||
Sbjct  292  GAGGTTTGTGGCGGGTTTGGTGAGTCGACGGTGAGG-TGCATCGTCGGAAATTGGTTTCT  234

Query  220  TTCAACGGTGTGTTT-CAATCCTCCTTCTATGTCGCAAAG  258
            | | | |||| |||| ||||||| |||||||| | |||||
Sbjct  233  TCCGATGGTG-GTTTTCAATCCTTCTTCTATGCCTCAAAG  195



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12064259760


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5