BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896917
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29385.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 601 4e-171
> AT3G29385.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: dentin sialophosphoprotein-related (TAIR:AT5G07980.1);
Has 74 Blast hits to 74 proteins in 11 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11284395-11285402
REVERSE LENGTH=657
Length=657
Score = 601 bits (325), Expect = 4e-171
Identities = 454/516 (88%), Gaps = 10/516 (2%)
Strand=Plus/Plus
Query 297 TGATAAGGTCGGTCCATATGAGGCGAAATCTCCTTCAGAGAGGAGGCTTGTTTTATCCAC 356
||| ||||||| | || ||||||||| |||||| ||| |||| |||||| ||| ||| ||
Sbjct 144 TGAGAAGGTCGATACAAATGAGGCGATATCTCCATCAAAGAGAAGGCTTCTTTCATCTAC 203
Query 357 ACATCTTATGCAACAGCTTCTCCAACCAGCACCAGCGTTTGTTTTCTTGGGCGAAAACGC 416
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 204 ACATCTTATGCAACAGCTTCTCCAACCAGCACCAACGTTTGTTTTCTTGGGCGACAACGC 263
Query 417 AGCTCTCAACTACGAAATCGTGCTTTACTTTATGTCAAGATTGACCCTCGCTGATTCATG 476
|||||| |||||||||||||||||||||| | |||| ||| | | ||||||| |||||||
Sbjct 264 AGCTCTTAACTACGAAATCGTGCTTTACTATGTGTCGAGAATCAACCTCGCTAATTCATG 323
Query 477 TTCTCTCAAATGTCGATCGGATTTGGAGAAGAGCAGAAATCGTCAAACTTCGAAGACAGC 536
|||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 324 TTCTCTAAAATGTCGCTCGGATTTGGATAAGAGCATAAATCGTCAAACTTCGAAGACAGC 383
Query 537 TAGTGATCAA---CAGTT---TTCTTCACTCGTTAATGCTTCCA-TGGAGAAAATACATA 589
|||| ||||| ||| ||||| ||| || ||||||| || || |||||||||| |
Sbjct 384 TAGTAATCAAGATCAGCAACATTCTTTACTTGTCAATGCTTTCAATG-AGAAAATACAGA 442
Query 590 AGCTTGAAAGTGACTTC-AAGAGCTTGGAGAGGACTACATCGATATTAGACATCATCTTC 648
|||||||||| ||||| || || || |||||||||||||| |||||||||||||||||
Sbjct 443 AGCTTGAAAGCAACTTCCAA-AGTTTAGAGAGGACTACATCAATATTAGACATCATCTTT 501
Query 649 GAAATCCAAGATCTCGAAAGATTCTCTGTGATAAACCATCTCGGCAAGTTTCATAACCGC 708
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 502 GAAATCCAAGACCTCGAAAGATTCTCTATGATAAACCATCTCGGCAAGTTTCATAACCGC 561
Query 709 GCAAAGACCATTACAAGACCTATTCCGCAGAGATACGTTGTTGGGATACAAATGCCAACG 768
||||||||| ||| ||||| ||||||||| | ||||| ||||| |||||||||||||| |
Sbjct 562 GCAAAGACCTTTAAAAGACTTATTCCGCATAAATACGCTGTTGCGATACAAATGCCAATG 621
Query 769 AACCTGCCCGAGCCACTACATTGTCTTCCACTGTGA 804
||||| || |||||||||||||||||||| ||||||
Sbjct 622 AACCTACCAGAGCCACTACATTGTCTTCCTCTGTGA 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39132400513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5