BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896922
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29580.1 | Symbols: | Arabidopsis phospholipase-like protei... 1094 0.0
AT3G58210.1 | Symbols: | TRAF-like family protein | chr3:21562... 134 2e-30
AT3G58240.1 | Symbols: | TRAF-like superfamily protein | chr3:... 60.2 3e-08
> AT3G29580.1 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) with TRAF-like domain | chr3:11394675-11395871
REVERSE LENGTH=921
Length=921
Score = 1094 bits (592), Expect = 0.0
Identities = 824/933 (88%), Gaps = 28/933 (3%)
Strand=Plus/Plus
Query 1 ATGGGAAATTTAGTCGATAACAAGTTCACTTGGGTGATTAATAAAGTCTCTTCTTTGACA 60
||||||||| ||| ||||||||||||||||||||||||||| || ||| | | |||| |
Sbjct 1 ATGGGAAATCTAGACGATAACAAGTTCACTTGGGTGATTAAGAATGTCCCAACGTTGA-A 59
Query 61 -TCAGATCTGCTTTTTTCGAATTATTTTGTGATCGGTGGTTGCAGCTGGCGTGTTGTGGC 119
|||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 60 TTCAGATATGCTTTTTTCGAATTATTTTGTCATCGGTGGCTGCAGCTGGCGTGTTGTGGC 119
Query 120 ACTTTCCAGAGACAATAACTTTAAAGACTCTTTATCTTTAACTCTGATTGTTACTGAAGA 179
|| ||||| ||| |||||||||||||| ||||||||| |||||||||||||| | |||||
Sbjct 120 ACATTCCAAAGAAAATAACTTTAAAGAATCTTTATCTCTAACTCTGATTGTTGCCGAAGA 179
Query 180 TTCTGCTCAAAAAATGAG-TGTTGGATGGAGTAGATACGCTAAAGTT-TCATTTACTCTA 237
|||||||||||||||| | || ||| |||||||||||||||||| || || |||||||||
Sbjct 180 TTCTGCTCAAAAAATGGGTTG-TGGGTGGAGTAGATACGCTAAAATTATC-TTTACTCTA 237
Query 238 ATCAATCAAATTTCTGAAATGCTCTCTCAACGTATAGAAACCATGTTTGATCAAAGGAGT 297
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 238 GTCAATCAAATTTCTGAAATTCTCTCTCAACGTATAGAAACCATGTTTGATCAAAAGAGT 297
Query 298 TCGGTTTTCAGTTGTGAAACCATGTTTTCCATTGGTAAACTTAATGATGATCA---TGCT 354
|||||||||||| | ||||| |||||||| ||||| ||| || |||||| || ||||
Sbjct 298 TCGGTTTTCAGTAGCGAAACTATGTTTTCTATTGGGAAA-TT--TGATGAACACTTTGCT 354
Query 355 GGATTT-TTGGTGGATGGAGAAATCAAGATTGTTGTTCAGTTTCTTGAAATTTTTGACAA 413
|||||| || || ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 355 GGATTTATT-GTAAATGGAGAAATCAAGATTGTTGTTGAGTTTCTTGAAATTATTGACAA 413
Query 414 ATTAGTGGTATCTAAAGAATCAAACCAGCCTTTTAAAAAGACAAAGCTAAATGATGATGG 473
||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 414 ATTAGTGTTATCTAAAGAATCAAACCCGCCTTTTAAAAAGACAAAGCTAAACAATGATGG 473
Query 474 TGAAGTGTCTAAAGATTTGATTAGGGAGGTTCCAGTAATAATTTCTTCC-TTCACAGTTT 532
|||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 474 TGAAGTGTCTAAAGATTTGATTAGGGAGGTTCCAGTAATAATGGAAAGCATTGTT-GTTA 532
Query 533 -TGTGGATCCtttttttttACTTG-CAGGTGGAATTTGTGAAGCGTATTTTTGAAAAACA 590
|| || | | | || || ||| |||||||||||||||||||||||||||||||||||
Sbjct 533 ATG-GGTTTCATGTTCTTC-CTTCACAGGTGGAATTTGTGAAGCGTATTTTTGAAAAACA 590
Query 591 TCCAGACATTGCATTAG-AGTTTTTTCCGAA-GAACCCGG-TTGTCAAGACAGCTTACAT 647
|||||| ||||| || ||||| ||| || ||||| || |||| |||||||| || ||
Sbjct 591 TCCAGATGTTGCAA-AGGAGTTTCGTCC-AACGAACC-GGATTGTGAAGACAGCGTATAT 647
Query 648 GAATGTTCTACTCAGTTTGATTGAGACTTTGGGCCAGCCGCCTCGAGAAATATCAAAGGA 707
||||||||||||||||||||||||||||||| ||||| ||||| ||||||| || ||| |
Sbjct 648 GAATGTTCTACTCAGTTTGATTGAGACTTTGCGCCAGTCGCCTAGAGAAATCTCTAAGAA 707
Query 708 TGATCTGGCTGGTGCATATGGTTTACTAAGATCCATGAAAGAGGCTGGATTTAAGTTGGA 767
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TGATCTGGATGGTGCATGTGGTTTACTAAGATCCATGAAAGAGGCTGGATTTAAGTTGGA 767
Query 768 TTGGTTGGAGAATAAACTGAATGAGGTGTTAAAAAAGAAGGAGAGCGAAGAA-GCTTATG 826
|||||||||||| ||||||||||| |||||| |||||||||||| |||||| | |||||
Sbjct 768 TTGGTTGGAGAAGAAACTGAATGAAGTGTTAGAAAAGAAGGAGAAAGAAGAAAG-TTATG 826
Query 827 AGACTCGAATGCGAGAAATCGAGGAAGAGATGAAAGACTTGAAGGAAAAAGTGTTGGACG 886
|||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||
Sbjct 827 AGACTCGAATGCGAGAAATCGAGGAAGAGATGAAGGACTTGAAGGCAAAAGCGTTGGACG 886
Query 887 TGGCAGCTCCTTTAAGGTTAGATGATGTTTTCT 919
||| ||||||||||||||||||||||||| |||
Sbjct 887 TGGGAGCTCCTTTAAGGTTAGATGATGTTGTCT 919
> AT3G58210.1 | Symbols: | TRAF-like family protein | chr3:21562442-21564067
REVERSE LENGTH=1196
Length=1196
Score = 134 bits (72), Expect = 2e-30
Identities = 245/326 (75%), Gaps = 22/326 (7%)
Strand=Plus/Plus
Query 556 CAGGTGGAATTTGTGAAGCGTATTTTTGAAAAACATCCAGACATTGCATTAGAGTTTTT- 614
|||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 586 CAGGTGGATTTTGTGAAGCGTATTTTTGAAAAACATCCAGACATTGCAAAAGA-TTTCCG 644
Query 615 TCCGAAGAACCCGGTTGTCAAGACAGCTTACATGAATGTTCTA-CTCAGTTTGATTGAGA 673
||| |||||||| | | | || ||| | ||||||| |||| ||||| || || ||||
Sbjct 645 TCCAAAGAACCCACATCTGAGGAAAGCATGCATGAAT-TTCTTGCTCAGCTTAATGGAGA 703
Query 674 CTTTGGGCCAGCCGCCTCGAGAAA-TATCAAAGGATGATCTGGCTGGT-GCATATGGTTT 731
| ||| |||| || |||| |||| ||||||| || ||||| | ||| ||| | |
Sbjct 704 CATTGTGCCAACCACCTC-AGAAGCTATCAAATGAAGATCTTG-TGGAAGCAGACAATGC 761
Query 732 ACTAAGATCCATGAAAGAGGCTGGATTTAA-GTTGGATTGGTTGGAGAATAAA-CT-GAA 788
||| | || | |||||| | || ||||| || ||||||||||||||| ||| || ||
Sbjct 762 ACTGACATACGTGAAAGTTTCGGGGTTTAAAGT-GGATTGGTTGGAGAA-AAAGCTAGAG 819
Query 789 TGAGGTGTTA-AAAAAGAAGGAG-AGCGAAGA-AGCTTATGAGACTCGAATGCGAGAAAT 845
|| ||| | |||||||||||| | ||| | | || |||| ||||||| | |||| |
Sbjct 820 -GAAGTGA-AGAAAAAGAAGGAGGAA-GAACAGA-CTGGTGAGGCTCGAATTCAAGAACT 875
Query 846 CGAGGAAGAGAT-GAAAGACTTGAAG 870
||||| || || ||| || || |||
Sbjct 876 AGAGGAGGA-ATTGAAGGAATTTAAG 900
> AT3G58240.1 | Symbols: | TRAF-like superfamily protein | chr3:21568530-21569827
REVERSE LENGTH=954
Length=954
Score = 60.2 bits (32), Expect = 3e-08
Identities = 38/41 (93%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAATTTAGTCGATAACAAGTTCACTTGGGTGATTAA 41
||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAATCCAGTCGATAACAAGTTCACTTGGGTGATTAA 41
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5