BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896923

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | high mobility group...   135    1e-31


> AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | high mobility group 
B4 | chr2:7642165-7643667 REVERSE LENGTH=833
Length=833

 Score =  135 bits (73),  Expect = 1e-31
 Identities = 75/76 (99%), Gaps = 0/76 (0%)
 Strand=Plus/Plus

Query  154  AGACTCAAAACCAGAGGTAGAAAGCCTGGGAAGAAGACGAAGAAGGATCCAAATCAACCT  213
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  141  AGACTCAAAACCAGAGGTAGAAAGGCTGGGAAGAAGACGAAGAAGGATCCAAATCAACCT  200

Query  214  AAGAGACCTCCAAGTG  229
            ||||||||||||||||
Sbjct  201  AAGAGACCTCCAAGTG  216


 Score =  110 bits (59),  Expect = 9e-24
 Identities = 59/59 (100%), Gaps = 0/59 (0%)
 Strand=Plus/Plus

Query  16   AGAAACTTCGACATGAAAGGCGGCGAATCCAAAGCTGAAGCAACGAGCACTGATCAGAG  74
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  84   AGAAACTTCGACATGAAAGGCGGCGAATCCAAAGCTGAAGCAACGAGCACTGATCAGAG  142



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12064259760


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5