BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896927
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29635.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1736 0.0
> AT3G29635.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr3:11465851-11467227 REVERSE LENGTH=1377
Length=1377
Score = 1736 bits (940), Expect = 0.0
Identities = 1163/1272 (91%), Gaps = 10/1272 (1%)
Strand=Plus/Plus
Query 1 ATGGCGCTAAAGGTAACCAAGATCTCCCGAGTCAGCCCGGCAAGAAACTCGTCTAATGAC 60
|||||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||
Sbjct 1 ATGGCGCTAAAGGTAACCAAGATCTCCCAAGTCAGCCCAGCAAGTAACTCGTCCAATGAC 60
Query 61 TCAGCCCACTGGATGGTTCTTCCACTGACATTCTTCGACTTACGGTGGTTAAAATTCCAT 120
|||||| ||| |||||||||||||||||| |||||||||||||| |||||| ||||||||
Sbjct 61 TCAGCCAACTCGATGGTTCTTCCACTGACGTTCTTCGACTTACGTTGGTTACAATTCCAT 120
Query 121 CCGACCGAAAGAGTTATCTTCTATAAACTCATCAAAAACTCATCTCTTGAGTCATTCCTC 180
|| |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||
Sbjct 121 CCCACCGAAAGAGTTATCTTCTACAAACTCATCAAAGACTCATCTCTTGAGTCCTTCCTC 180
Query 181 ACCGTGATCCTCCCCAAACTTGAGCTCTCTCTCTCCATCGTCCTCCGTCACTACCTCCCG 240
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 TCCGTGATCCTCCCCAAACTTGAGCTCTCTCTCTCCATCGTCCTTCGTCACTACCTCCCG 240
Query 241 CTTGCTGGCCGCCTCACATGGGGCTCACAAGATCCTATACCTAGCATCGTCGTCTCTTGG 300
|| |||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |
Sbjct 241 CTCGCTGGCCGCCTCACATGGAGCTCACAAGATCCTAAACCTAGCATCATCGTCTCTCCG 300
Query 301 AATGACTATGTCTCGTTGACAGTCGCGGAGAGCGATGCTGATTTTTACCTTATCTCCGGT 360
|| |||||||| || ||||| ||||||||||| ||||||||||| | || ||||||||||
Sbjct 301 AACGACTATGTTTCCTTGACTGTCGCGGAGAGTGATGCTGATTTCTCCCGTATCTCCGGT 360
Query 361 AAAGGGCTACGTCCCGAAACGGAGATACGATATTTGGTGCCCGAGTT-TCCGCTTTCTTG 419
|||||| ||||||||||| |||||||||| | ||||||||||||||| | ||||||||||
Sbjct 361 AAAGGGATACGTCCCGAATCGGAGATACGCTCTTTGGTGCCCGAGTTAT-CGCTTTCTTG 419
Query 420 TGACTCACCTTCGGTTCTTTCTTTGCAAATCACTTTGTTCCCGAACCAAGGGTTTTGTAT 479
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 420 TGACTCACCTTCGGTTCTTTCTTTGCAAGTCACTTTGTTCCCCAACCAAGGGTTTTGTAT 479
Query 480 TGGTATATCAGCTCATCATTCTGTTATGGACGGCAAAACAGTGGTTAGGTTTATCAAATC 539
|||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 480 TGGTATCGCTTCTCATCATTCTGTTATGGACGGGAAAACAGTGGTTAGGTTTATAAAATC 539
Query 540 ATGGGCTCACATTTGTAAACATGGAGCCACT-GATTTACCGAATGATTTAACTCCGTTTT 598
||||||||||||||||||||||||||||| | ||||||||| | ||||| |||||| |||
Sbjct 540 ATGGGCTCACATTTGTAAACATGGAGCCA-TGGATTTACCGGAGGATTTGACTCCGGTTT 598
Query 599 TAGATCGTACGGTTATCAATGTTCCTGCAAGTCTCGATGCAAAAATCTTTGAACTTTTGT 658
|||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||
Sbjct 599 TAGATCGTACGGTTATCAATGTCCCTGCAAGTCTTGATGCAAAAATCATTGAACTTTTGT 658
Query 659 CACATTTTTCAGAAGAGAAAGATAGCCTCAGATCACTGAAGCTGCTTCCTACCAAGGAGA 718
|| |||| ||||||| ||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 659 CATATTTCTCAGAAGTGAAAGATAGTTTCAGATCATTGAAGCTGCTTCCTCCCAAGGAGA 718
Query 719 TCAGCCCCGACCTAGTCCGGATCTCGCTCGAGTTGACTCGAGAGAATATAGAGAAACTTA 778
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCAGCCCCGACCTAGTACGGATCTCGCTCGAGTTGACTCGAGAGAATATAGAGAAACTTA 778
Query 779 GAGAGCGAGCCAAGAAGGAGTCAACTCGCTCTCATCTTGAGCTTCACTTGTCAACGTTCG 838
| |||| |||||||| ||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 779 GGGAGCAAGCCAAGAGGGAGTCAGCTCGCTCTCATCATGAGCTTCACTTGTCAACGTTCG 838
Query 839 TTGTTGCAAACGCGTACCTGTGGACATGCTTAGTGAAGACGCGTGGGGGAGATGTGAACA 898
||||||| |||||||| || ||||||||||| || ||||||||||| ||||||| |||||
Sbjct 839 TTGTTGCCAACGCGTATCTTTGGACATGCTTGGTAAAGACGCGTGGAGGAGATGAGAACA 898
Query 899 GGCCGGTGCGTTTCATGTATGCTGCTGATTTGAGGAACCGGTTAGATCCACCGGTTCCTG 958
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 899 GACCGGTCCGTTTCATGTATGCTGCTGATTTCAGGAACCGGTTAGATCCACCGGTTCCTG 958
Query 959 AGACGTATTTCGGGAACTGCGTGTTCCCGATAGGTTGCTTTGGTTACAAGGCGAAGGTAC 1018
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 959 AGATGTATTTCGGGAACTGCGTGTTCCCGATAGGTTGCTTTGGTTACAAGGCGAATGTGT 1018
Query 1019 TTTTGAGAGAAGATGGATTTGTCAACGCGATCGAGATTCTAAGTGATTCAGTTAGAAGCA 1078
||||| |||||||||| ||||| || | |||| |||||||||||||| |||||||| |
Sbjct 1019 TTTTGGGAGAAGATGGGTTTGTTAATATGGTCGAAATTCTAAGTGATTCGGTTAGAAGTA 1078
Query 1079 TTGGTTCACGAAAGATTG-AAACAATTTGCGAAAGGTACAT-AGATGGAACAAAGAGTGT 1136
|||||| ||||||| ||| |||||||||||||| |||||| | ||||||||||||||||
Sbjct 1079 TTGGTTTACGAAAG-TTGGAAACAATTTGCGAATTGTACATTA-ATGGAACAAAGAGTGT 1136
Query 1137 GAAACCTGGTACACAG-TCTGGATCCATTGCCGGTTCGAACCATTTTGGGCTATATGGAT 1195
|||||| ||||||||| | |||||||||||||||||||||||| ||||||||||| || |
Sbjct 1137 GAAACCAGGTACACAGAT-TGGATCCATTGCCGGTTCGAACCAGTTTGGGCTATACGGGT 1195
Query 1196 CTGATTTTGGGTGGGGAAAACCCTGTAACAGTGAGATTGTGTCCATCGACCGGAACGAGG 1255
| ||||| |||||||||||||| |||||||||||||||| |||||| ||||| |||||||
Sbjct 1196 CAGATTTCGGGTGGGGAAAACCATGTAACAGTGAGATTGCGTCCATTGACCGAAACGAGG 1255
Query 1256 CGTTTTCTATGT 1267
||||||| ||||
Sbjct 1256 CGTTTTCGATGT 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62399277435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5