BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896948
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT3G30260.1 | Symbols: AGL79 | AGAMOUS-like 79 | chr3:11909119-... 1048 0.0
> AT3G30260.1 | Symbols: AGL79 | AGAMOUS-like 79 | chr3:11909119-11912880
FORWARD LENGTH=750
Length=750
Score = 1048 bits (567), Expect = 0.0
Identities = 693/752 (92%), Gaps = 16/752 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGGGGAAGGGTTCAGCTACGGCGGATCGAGAACAAGATAAGGAGACAAGTGACA 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGGAAGAGGAAGGGTTCAGCTACGGCGGATCGAGAATAAGATAAGGAGACAAGTGACA 60
Query 61 TTTTCAAAGCGAAGAACCGGTTTGGTTAAGAAAGCTCAAGAGATCTCAGTGTTATGTGAT 120
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TTTTCAAAGCGAAGGACCGGTTTGGTAAAGAAAGCTCAAGAGATCTCAGTGTTATGTGAT 120
Query 121 GCTGATGTTGCTTTGATTGTCTTCTCCCCCAAAGGCAAGCTCTTTGAGTACTCTGCTGGT 180
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GCTGAAGTTGCTTTGATTGTTTTCTCCCCCAAAGGCAAACTCTTTGAGTACTCTGCTGGT 180
Query 181 TCCAGCATGGGGAGAATTCTTGATCGATATGAGAGATCTTCCTACGCCGGTCAAGATATT 240
|||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 181 TCCAGCATGGAGAGAATTCTTGATCGATATGAGAGGTCTGCCTACGCCGGTCAAGATATT 240
Query 241 CCTACACCAAATTTGGATTCACAGGGAGAGTGTTCAACAGAATGTTCAAAGCTCTTGAGG 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 CCTACACCAAATTTGGATTCACAGGGAGAGTGCTCAACAGAATGTTCAAAGCTCTTGAGG 300
Query 301 ATGATTGATGTCATGCAAAGAAGCCTAAGACACTTAAGAGGAGAAGAGGTGGATGATCTA 360
|||||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 301 ATGATTGATGTCCTGCAAAGAAGCCTGAGGCACTTAAGAGGAGAAGAGGTGGATGGTCTA 360
Query 361 AGCATCAGAGAGCTTCAAGGTTTGGAGATGCAACTTGATACTGCCCTCAAGAAAACTCGC 420
|| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTATCAGAGACCTTCAAGGTGTGGAGATGCAACTTGATACTGCCCTCAAGAAAACTCGC 420
Query 421 TCTAGAAAGAACCAGCTCATGGTAGAGTCCATAGCACAGCTTCAGAAAAAGGAGAAGGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTAGAAAGAACCAGCTCATGGTAGAGTCCATAGCACAGCTTCAGAAAAAGGAGAAGGAA 480
Query 481 CTAAAAGAACTGAAGAAACAGCTAACAAAGAAGGCTGGTCAAAGAGAAGACTTTCAG-CT 539
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct 481 CTAAAAGAACTGAAGAAACAGCTAACAAAGAAGGCTGGTGAAAGGGAAGACTTTCAAAC- 539
Query 540 GCAAAACCTCAGCCATGACTTATCCTCCTCGGCAACGCCGCCATATGAACCACCGCACGA 599
|||||||||||||||||||||| |||||| |||||| ||||||| |||| |||| || ||
Sbjct 540 GCAAAACCTCAGCCATGACTTAGCCTCCTTGGCAACACCGCCATTTGAATCACCCCATGA 599
Query 600 GCTGCCCCC-ACCAATATCTCCTCCTCCTG-TA-TCT-T-TT-GGGG-ATGCA-C-CAA- 649
||| | || || |||||||||||||||| | | | | || |||| || || | |||
Sbjct 600 GCTTCGCCGGAC-AATATCTCCTCCTCCTCCTCCTTTATCTTCGGGGGATACATCACAAA 658
Query 650 GGAATGGAGTGGGAGAAGTAGCTGCTGGAACCCTAATTCGGAGGACTA---CAACGTTGC 706
|| ||||||| |||||||||||||| |||||||||||||| ||||| | |||||||||
Sbjct 659 GGGATGGAGTTGGAGAAGTAGCTGCCGGAACCCTAATTCGAAGGACGAATGCAACGTTGC 718
Query 707 CGCATTGGATGCCCCGGCTCACCAGAGAATAG 738
| ||||||||||||| ||||||| ||||||||
Sbjct 719 CTCATTGGATGCCCCAGCTCACCGGAGAATAG 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5