BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896961

Length=159
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G43833.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   176    5e-44


> AT3G43833.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:15687554-15688773 
FORWARD LENGTH=974
Length=974

 Score =  176 bits (95),  Expect = 5e-44
 Identities = 120/132 (91%), Gaps = 2/132 (2%)
 Strand=Plus/Plus

Query  1    ATCGTCATTGAAGTTCCCCTTTTCGATGGATTTGTCCGTCGTAATGTCACATTCGCGTTG  60
            |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |||
Sbjct  639  ATCGTCATTGAAGTTCCCCTTTTCGATGGAATTGTCTGTCGTAATGTCGCATTCGCATTG  698

Query  61   CTAGCGGAAGTTTGTGGCTTGAAGGCCTCCTTGGAAGCAAAGGATGGTGCT-GAAATCAG  119
            |||||| |||   || ||||||||||||||||||||||||||||||||||| ||| || |
Sbjct  699  CTAGCGAAAGAACGTAGCTTGAAGGCCTCCTTGGAAGCAAAGGATGGTGCTAGAA-TCGG  757

Query  120  TTGTCTTGGTTT  131
            ||||||||||||
Sbjct  758  TTGTCTTGGTTT  769



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6840983736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5