BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896967
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT3G30390.1 | Symbols: | Transmembrane amino acid transporter ... 2206 0.0
AT5G38820.1 | Symbols: | Transmembrane amino acid transporter ... 961 0.0
> AT3G30390.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr3:11976837-11979621 REVERSE LENGTH=1937
Length=1937
Score = 2206 bits (1194), Expect = 0.0
Identities = 1314/1373 (96%), Gaps = 3/1373 (0%)
Strand=Plus/Plus
Query 8 TTGGAGATGTTGCTCCAATTCCAAGGAGGAACAG-T-T-CTTGCGCTAATGAAATTGTTG 64
|||||||||||||||||||||||||||||||||| | | ||||| ||||||| || | ||
Sbjct 290 TTGGAGATGTTGCTCCAATTCCAAGGAGGAACAGTTCTACTTGCTCTAATGATATCGCTG 349
Query 65 CTCCGTTATTACCAGAGTGTCATGGAGATGAAGTTGCTTATGATGAATTCAATGGAGCTT 124
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 350 CTCCGTTATTACCAGAGTGTCATGGAGATGAAGTTGCTCATGATGAATTCAATGGAGCTT 409
Query 125 CTTTTAGTGGCGCGGTTTTTAATCTCGCTACGACTATAATTGGTGCTGGTATCATGGCTT 184
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 410 CTTTTAGTGGCGCGGTTTTTAACCTCGCCACGACTATAATTGGTGCTGGTATCATGGCTT 469
Query 185 TGCCGGCTACGATGAAGATTCTTGGACTTGGACTTGGAATCACTATGATTGTTGTTATGG 244
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 470 TGCCTGCTACAATGAAGATTCTTGGACTTGGACTTGGAATCACGATGATTGTTGTTATGG 529
Query 245 CTTTCTTGACTGATGCATCGATTGAGTTCTTGCTTAGGTTTAGTAAAGCTGGGAAGAATC 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CTTTCTTGACTGATGCGTCGATTGAGTTCTTGCTTAGGTTTAGTAAAGCTGGGAAGAATC 589
Query 305 GATCTTACGGTGGTTTAATGGGTGGTTCTTTTGGTAATCCCGGAAGGATTTTGCTTCAAG 364
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 590 GATCTTACGGTGGTTTAATGGGTGGTTCTTTTGGTAATCCTGGAAGGATTTTGCTTCAAG 649
Query 365 TCGCGGTTTTCGTTAACAACATCGGTGTTTTGATTGTTTACATGATCATCATAGGTGATG 424
|||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 650 TCGCGGTTTTAGTTAATAACATCGGTGTTTTGATTGTATACATGATCATTATAGGTGATG 709
Query 425 TGTTGGCTGGAAAGACGGAAGATGGAATCCATCATTTCGGTGTTCTTGAAGGATGGTTCG 484
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct 710 TGTTGGCTGGAAAGACGGAAGATGGTATCCATCATTTCGGTGTTCTCGAAGGATGGTTTG 769
Query 485 GTCACCATTGGTGGAACGGAAGAGCTGCTATTCTTCTTATTACAACTCTTGGTGTGTTTG 544
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 770 GTCACCATTGGTGGAATGGAAGAGCTGCTATTCTTCTGATTACTACTCTTGGTGTGTTTG 829
Query 545 CTCCATTAGCTTGCTTCAAGCGAATTGATTCTTTGAAATTTACATCTGCCTTATCCGTGG 604
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 830 CTCCATTGGCTTGCTTCAAGCGAATCGATTCTTTGAAATTTACATCGGCCTTATCCGTGG 889
Query 605 CTCTGGCGGTTGTGTTTCTCATTATTACAGCGGGAATTTCGATTATGAAGTTGATCAGTG 664
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 890 CTCTGGCGGTTGTGTTTCTCATTATTACTGCGGGAATTTCAATTATGAAGTTGATCAGTG 949
Query 665 GCGGTGTGGCGATGCCAAGATTGCTACCAGATGTTACCGACTTAACATCTTTCTGGAATC 724
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 950 GCGGTGTGGCGATGCCAAGATTGTTACCAGATGTTACTGACTTAACATCTTTCTGGAATC 1009
Query 725 TCTTCACAGTTGTACCCGTTCTTGTCACAGCATTCATTTGCCATTACAATGTTCACAGCA 784
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1010 TCTTCACAGTCGTACCTGTTCTTGTCACAGCATTCATTTGCCATTACAATGTTCACAGTA 1069
Query 785 TACAGAACGAGCTCGAAGACGCCTCTCAGATAAGACCTGTTGTCCGATCAGCACTTATGC 844
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1070 TACAGAACGAGCTCGAAGACCCCTCTCAGATAAGACCTGTTGTTCGATCAGCACTTATGC 1129
Query 845 TCTGCTCATCTGTTTACATAATGACAAGCATTTTCGGGTTCCTCTTGTTTGGTGATGATA 904
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1130 TCTGCTCATCTGTTTACATAATGACAAGTATTTTCGGGTTCCTCTTGTTTGGTGATGATA 1189
Query 905 CTCTTGATGATGTCCTTGCAAACTTTGACACCGACCTTGGAATCCCTTTTGGTTCTATCC 964
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1190 CTCTTGATGATGTCCTTGCAAACTTTGACACTGATCTTGGAATCCCTTTTGGTTCTATCC 1249
Query 965 TTAATGATGCGGTTCGAGTTAGCTACGCACTTCATCTGATGCTCGTGTTCCCAATTGTTT 1024
|||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 1250 TTAATGATGCGGTTCGAGTTAGCTACGCGCTTCATTTGATGCTCGTGTTCCCGATTGTTT 1309
Query 1025 TCTACCCTCTGCGGATTAACATTGACGGGCTCTTGTTCCCTTCCGCCCGATCATTATCTA 1084
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1310 TCTACCCTCTTCGGATTAACATTGACGGGCTCTTGTTCCCTTCCGCTCGATCATTATCTA 1369
Query 1085 CCTCAAATGTGAGGTTCGGTTGCCTCACTGCCGGTCTCATCTCTGTAGTCTTCTTGGGTG 1144
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1370 CCTCAAATGTGAGGTTCGGTTGCCTCACTGCCGGTCTCATCTCTGTAATCTTCTTGGGTG 1429
Query 1145 CAAACTTCATCCCGAGCATTTGGGATGCTTTCCAATTCACTGGAGCAACTGCCGCTGTTT 1204
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1430 CAAACTTCATCCCAAGCATTTGGGATGCTTTCCAATTCACTGGAGCAACCGCCGCTGTTT 1489
Query 1205 GTCTCGGCTTCATCTTCCCCGCGTCTATTATACTAAAGGATCGGCATGGCAAAGCAACAA 1264
||||||||||||||||||| || ||||| |||||||||||||| |||| |||||||||||
Sbjct 1490 GTCTCGGCTTCATCTTCCCAGCTTCTATCATACTAAAGGATCGTCATGACAAAGCAACAA 1549
Query 1265 ACAGGGACACAACCTTAGCCATTTTCATGATCGTTCTTGCGGTATTGTCCAATGCAATCG 1324
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1550 ACAGGGACACAACCTTAGCTATTTTCATGATTGTTCTTGCGGTATTGTCCAATGCAATCG 1609
Query 1325 CCATTTACAGCGATGCCTATGCACTATTCAAGAGGAACGCGCCTCGTGAGTAA 1377
|||||||||||||||| ||||| |||||||||| |||||| ||||||||||||
Sbjct 1610 CCATTTACAGCGATGCTTATGCGCTATTCAAGAAGAACGCTCCTCGTGAGTAA 1662
> AT5G38820.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr5:15543481-15545182 FORWARD LENGTH=1371
Length=1371
Score = 961 bits (520), Expect = 0.0
Identities = 1037/1281 (81%), Gaps = 58/1281 (5%)
Strand=Plus/Plus
Query 109 GAATTCAATGGAGCTTCTTTTAGTGGCGCGGTTTTTAATCTCGCTACGACTATAATTGGT 168
|||||||| |||||||| |||||||| |||||||| ||||||||||| || || || ||
Sbjct 91 GAATTCAACGGAGCTTCGTTTAGTGGTGCGGTTTTCAATCTCGCTACAACGATCATCGGA 150
Query 169 GCTGGTATCATGGCTTTGCCGGCTACGATGAAGATTCTTGGACTTGGACTTGGAATCACT 228
|||||||||||||| ||||| || ||||||||||| || || ||| | ||||||||
Sbjct 151 GCTGGTATCATGGCATTGCCTGCGACGATGAAGATCCTCGGTCTTATTCCCGGAATCACG 210
Query 229 ATGATTGTTGTTATGGCTTTCTTGACTGATGCATCGATTGAGTTCTTGCTTAGGTTTAGT 288
|| || ||| | ||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 211 ATCATCGTTCTCATGGCTTTCTTAACCGATGCTTCGATTGAGTTCTTGCTTAGGTTTAGT 270
Query 289 AA-AGCTGGGAAG-AATCGATCTTACGGTGGT-TTAATGGGTGGTTCTTTTGGTAA-TCC 344
|| | |||||| || |||||||||||||| ||| ||| || |||||||||||| |
Sbjct 271 AACAT-TGGGAATCAAA-GATCTTACGGTGGTGTTA-TGGATGATTCTTTTGGTAAATGT 327
Query 345 CGGAAGGATTTTGCTT-CAAGTCGCGGTTTTCGTTAACAACATCGGTGTTTTGATTGTTT 403
||||||||| || || ||||| || || |||||| |||||| ||||||||||| ||||
Sbjct 328 -GGAAGGATTATG-TTGCAAGTTTCGATTCTCGTTAGCAACATTGGTGTTTTGATCGTTT 385
Query 404 ACATGATCATCATAGGTGATGTGTTGGCTGGAAAGACGGAAGATGGAATCCATCATT-TC 462
| ||||||||||| |||||||| |||||||| |||| ||| |||||||||||||| |
Sbjct 386 ATATGATCATCATTGGTGATGTTTTGGCTGGTAAGAATGAATATGGAATCCATCATGCT- 444
Query 463 GGTGTTCTTGAAGGATGGTTCGGTCACCA-TTGGTGGAACGGAAGAGCTGCTATTCTTCT 521
||| | |||||||||||||| || | | |||||||||| ||||| || | |||||||
Sbjct 445 GGTATGCTTGAAGGATGGTTTGGG-ATTAGTTGGTGGAACAGAAGAACTTTTGTTCTTCT 503
Query 522 TATTACAACTCTTGGTGTGTTTGCTCCATT-AGCTTGCTTCAAGCGAATTGATTCTTTGA 580
| |||| ||||| ||| ||||||||||| | |||||||||| ||||||||||||||||
Sbjct 504 TGTTACTACTCTCACTGTCTTTGCTCCATTGA-CTTGCTTCAAACGAATTGATTCTTTGA 562
Query 581 AATTTACATCTGCCT-TATCCGTGGCTCTGGCGGTTGTGTTTCTCATTATTACAGCGGGA 639
||| |||||||| | |||| || ||| | |||||||| ||||| | || || || |||
Sbjct 563 GATTCACATCTGC-TATATCAGTTGCTTTAGCGGTTGTTTTTCTTGTCATCACTGCTGGA 621
Query 640 ATTTCGATTATGAAGTTGATCAGTGGCGGTGTGGCGATGCCAAGA-TTGCTACC-AGATG 697
||| | || || ||| || | | || ||| || |||||| ||| || ||||| | |||
Sbjct 622 ATTACTATCATTAAGCTGTTTACTGATGGTTTGATGATGCCGAGACTT-CTACCTA-ATG 679
Query 698 TTACCGACTTAACATC-TTTCTGGAATCTCTTCACAGTTGTACCCGTTCTTGTCACA-GC 755
| || ||||| | || ||| ||||| |||||||| ||||| || || ||||||| | ||
Sbjct 680 TCACTGACTTGTCGTCGTTT-TGGAAACTCTTCACGGTTGTTCCTGTGCTTGTCA-ATGC 737
Query 756 ATTCATTTGCCATTACAATGTTCACAGCATACAGAACGAGCTCGAAGACGCCT-CTCAGA 814
|| ||||||||||||||||||||| || |||||||||||||| |||||| ||| ||| ||
Sbjct 738 ATACATTTGCCATTACAATGTTCATAGTATACAGAACGAGCTTGAAGAC-CCTTCTCGGA 796
Query 815 TAAGACCTGTTGTCCGATCAGCACTTATGCTCTGCTCATCTGTTTACATAATGACAAGCA 874
||| ||||||||| |||||||||||| | | || || ||||||||| | ||||| ||
Sbjct 797 TAAAACCTGTTGTTCGATCAGCACTTGCGATGTGTTCTTCTGTTTACGTTATGACGAGT- 855
Query 875 TT-TTCGGGTTCCTCTTGTTTGGTGATGATACTCTTGATGATGTCCTTGCAAACTTTGAC 933
|| ||||| | |||||| || ||||||| ||||||||||||||| |||||||||||||||
Sbjct 856 TTATTCGGATACCTCTTATTCGGTGATGGTACTCTTGATGATGTTCTTGCAAACTTTGAC 915
Query 934 ACCGACCTTGGAATCCCTTTTGGTTCTATCCTTAATGATGCGGTTCGAGTTAGCTACGCA 993
|| || |||||||||||||||||||| | ||||||||||| || || |||||||||||
Sbjct 916 ACGGATCTTGGAATCCCTTTTGGTTCGGTTCTTAATGATGCAGTGAGATTTAGCTACGCA 975
Query 994 -CTTCATCTGATGCTCGTGTTCCCAATTGTTTTCTACCCTCTGCGGATTAACATTGACGG 1052
|| ||||| ||||| |||||||| |||| ||||| ||||||||||||||||| |||||
Sbjct 976 GCT-CATCTCATGCTTGTGTTCCCTGTTGTCTTCTATCCTCTGCGGATTAACATCGACGG 1034
Query 1053 GCTCTTGTTCCCTTCCGC-CCGATCA-TTATCTACCTCAAA-TGTGAGGTTCGGTT-GCC 1108
||| | || ||| | || || | || ||| || |||| | | ||| | |||| | |
Sbjct 1035 TCTCATCTTTCCTACGGCTCC-ACCACTTA-CTTCCTCTGAGTCTGATCTGAGGTTTGGC 1092
Query 1109 TC-A---CTGCCGGTCTCATCT-CTGTAGTCTTCTTGGGTGCAAACTTCATCCCGAGCAT 1163
|| | |||| |||||||| | ||||| |||||||||| ||||||||||| || |||||
Sbjct 1093 TCTATTACTGCTGGTCTCAT-TGCTGTAATCTTCTTGGGAGCAAACTTCATACCAAGCAT 1151
Query 1164 TTGGGATGCTTTCCAATTCACTGGAGCAACTGCCGCTGTTTGTC-TCGGCTTCATCTTCC 1222
|||||||||||||||||| |||||||||||||| ||||| || | |||| ||||| ||||
Sbjct 1152 TTGGGATGCTTTCCAATTTACTGGAGCAACTGCTGCTGTCTG-CATCGGTTTCATATTCC 1210
Query 1223 CCGC-GTCTATTATACT-AAAGGATCGGCATGGCAAAGCAACAAA-CAGGGACACA-ACC 1278
| || | || |||| || ||||||||| ||| | ||||||| || | | |||| | ||
Sbjct 1211 CTGCTG-CTGTTAT-CTTAAAGGATCGTCATAACCAAGCAACCAAGC-GAGACA-AGAC- 1265
Query 1279 T-TAGCCATTTTCATGATCGTTCTTGCGGTATTGTCCAATGCAATCGCCATTTACAGCGA 1337
| ||||||||| ||||||||| |||||||| || ||||||||||||||||||||||| ||
Sbjct 1266 TATAGCCATTTGCATGATCGTCCTTGCGGTTTTCTCCAATGCAATCGCCATTTACAGTGA 1325
Query 1338 TGCCTATGCACT-ATTCAAGA 1357
||||| || || ||||||||
Sbjct 1326 CGCCTACGC-CTTATTCAAGA 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5