BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896971
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29760.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1051 0.0
> AT3G29760.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr3:11589505-11591833 REVERSE
LENGTH=1862
Length=1862
Score = 1051 bits (569), Expect = 0.0
Identities = 743/824 (90%), Gaps = 23/824 (3%)
Strand=Plus/Plus
Query 319 GAAAAGAATAAAGAAGCTTCTGTTATATCGGGTGGTACGAGAAGTGATGAAGTTCCCGTG 378
||||||||| |||||| ||| |||||||||| || || ||| |||||||||||| | |||
Sbjct 790 GAAAAGAATGAAGAAGGTTCGGTTATATCGGCTGTTATGAGTAGTGATGAAGTTTCAGTG 849
Query 379 GTAGTGAACAACGATTCTTGTGTTG-CTTTGAGTGGAATCAGAGGCGAGAGCGGATCAAA 437
|||| |||||||||||||||||||| |||| |||||||| | || | | || | |||
Sbjct 850 GTAGAGAACAACGATTCTTGTGTTGTTTTTG-GTGGAATC--A-GC--G-G-GG-T-AAA 899
Query 438 TTCATCGGTCTTAAAGAAAAAACTTCTTGTTCTTGATCTTAATGGGTTGCTTGCTGATAT 497
||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTCATTGGTGTTAAGGAAAAAACTTCTTGTTCTTGATCTTAATGGGTTGCTTGCTGATAT 959
Query 498 AGTTACTCCTCTAAAAGATGTTCCAGCGGACATTAATATTGGAAGAAGAGCAATTTTTAA 557
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 960 AGTTACTCCTCTCAAGGATGTTCCAGCGGATATTAATATTGGAAGAAGAGCAATTTTCAA 1019
Query 558 GAGACCTTATTGTGATGAGTTTTTGAAG-TTCTGTTTTGACAAGTTTGAAGTTGGTATCT 616
|||||||| |||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 1020 GAGACCTTTTTGTGATGAGTTTTTG-AGATTCTGCTTTGACAAGTTTGAAGTTGGTATCT 1078
Query 617 GGTCATCGAGAAAACAGAATAATGTTGTAAGAATCACTGAGTTCTTGCTTGGTGATTTGA 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GGTCATCGAGAAAACAGAATAATGTTGTAAGAATCACTGAGTTCTTGCTTGGTGATTTGA 1138
Query 677 AGAATAAACTTTTGTTTTGCTGGGACATGTCTTATTGTGCTACAACGACTGTTGGTTCCC 736
||| ||| || |||||||| |||||||||||||||||||||||||| | ||||||||| |
Sbjct 1139 AGAGTAAGCTGTTGTTTTGTTGGGACATGTCTTATTGTGCTACAACCAGTGTTGGTTCGC 1198
Query 737 TTGAAAATATGCACAAATATGTGGTGTTCAAGGATCTAAACCGGCTCTGGGAGAAACATG 796
||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1199 TTGAAAATAGGTACAAATATGTGGTGTTCAAGGATCTAAACCGGCTTTGGGAGAAACACG 1258
Query 797 ACCCAAGACTTCCTTGGAAAATGGGTGATTACAACGAAACCAACACGGTTTTGCTTGATG 856
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1259 ATCCAAGACTTCCTTGGAAAATGGGTGATTACAACGAAACCAACACGGTTTTGCTAGACG 1318
Query 857 ATTCTCCTTACAAGGCTTTGCTTAACCCGCCATATACAGCAATATTCCCTCATTCATACA 916
|||||||||||||||||||||||||||||| | ||| | | ||||||||||||||
Sbjct 1319 ATTCTCCTTACAAGGCTTTGCTTAACCCGC-A-ATA------T-T-CCCTCATTCATACA 1368
Query 917 ACCATCAGAACAAAACTGACACATCCTTAGGTAATGGTGGTGATCTGAGACTTCATCTAG 976
| ||||||||||| || || ||||| |||||||||||||||||| ||||||||||||| |
Sbjct 1369 ATCATCAGAACAAGACAGATACATCTTTAGGTAATGGTGGTGATTTGAGACTTCATCTTG 1428
Query 977 AGAAGTTGGTAGAAGCTGAAAACGTTCAAGATTTCATCAAGAACAACCCTTTCGGGCAAG 1036
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1429 AGAAGTTGGTAGAAGCGGAAAACGTTCAAGATTTCATCAAGAAAAACCCTTTCGGGCAAG 1488
Query 1037 AAGCTATTACGGTTGCAAGTGAATCTTGGGAGTATTACAGAGAGGCCATTCGTATGCTAC 1096
|||||||||||| | ||| ||||| ||||||| |||||||||| ||||||||||||||
Sbjct 1489 AAGCTATTACGGAAGTAAGCGAATCGTGGGAGTTTTACAGAGAGATCATTCGTATGCTAC 1548
Query 1097 ACATATCTTTTCAGACATACAGATTAAGAAACTTCATACGGTAG 1140
||||||| ||| || ||||||||||| ||| |||||||||||
Sbjct 1549 GTATATCTTCTCAAACGTACAGATTAAGGAACATCATACGGTAG 1592
Score = 207 bits (112), Expect = 1e-52
Identities = 154/175 (88%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 1 ATGAGAGCAATTGAACATTCTGTTGAAGAGGAACCTCTGATTAAGAAAGCTAGAGTGATT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 ATGAGAGCAATTGAACATTCTGTTGAAGAGGAACCTCTGATTAAGAAAGCTAAATTGATT 60
Query 61 GATAAGGTAGAGAATTGTTACGAGCTTCCAATGTTGTCGCTAAACGAAACAGCGGTTGAT 120
|||||||| || |||||| ||||| || |||||||| ||||||||||||| | |||| |
Sbjct 61 GATAAGGTCGAAAATTGTCACGAGGTTTCAATGTTGCCGCTAAACGAAACCGTGGTTAAA 120
Query 121 GGGAATGAACAAGTTTCTTTGTTAGATGTTGAAGAGAAGACTGAGACTCCTGTTG 175
||||||||| |||||| |||||||||| | ||||| |||| |||||| |||||
Sbjct 121 GGGAATGAAGAAGTTTGTTTGTTAGATATGGAAGATAAGAAAGAGACTTGTGTTG 175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5