BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg896989

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G29375.1 | Symbols:  | XH domain-containing protein | chr3:1...   130    8e-30


> AT3G29375.1 | Symbols:  | XH domain-containing protein | chr3:11280151-11281894 
FORWARD LENGTH=1133
Length=1133

 Score =  130 bits (70),  Expect = 8e-30
 Identities = 106/123 (86%), Gaps = 4/123 (3%)
 Strand=Plus/Plus

Query  168  GGAAGTGGTGGATGAAGAAGATGAGAAACTTAAGAATCTGAGAGAGGAATGGGGAGAAGA  227
            ||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct  822  GGAAGTGGTGGATGAAGAAGATGAGAAACTTAAGAATCTCAGAGAAGAGTGGGGAGAAGA  881

Query  228  AGTGGA-GAACGCAATTAGGACAGCCCTCGAGGA-GCTGAATGAGTTCAACCCAAGTGGC  285
             ||| | ||||||| | | ||| || ||||| || | | || ||||| ||||||||||||
Sbjct  882  GGTG-ATGAACGCAGTAAAGACGGCTCTCGAAGAAGTT-AACGAGTTTAACCCAAGTGGC  939

Query  286  CGA  288
            |||
Sbjct  940  CGA  942



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14326308465


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5