BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg896999
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07630.1 | Symbols: | transposable element gene | chr2:3208... 255 3e-67
AT3G31990.1 | Symbols: | transposable element gene | chr3:1297... 244 6e-64
> AT2G07630.1 | Symbols: | transposable element gene | chr2:3208710-3210809
REVERSE LENGTH=1377
Length=1377
Score = 255 bits (138), Expect = 3e-67
Identities = 197/224 (88%), Gaps = 10/224 (4%)
Strand=Plus/Plus
Query 61 GATGTAAGGAGTATCTCCAATGCTTTCAATACATCTCAGATCTTGATCAATCCAGA-CAT 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 532 GATGTTAGGAGTATCTCCAATGCTTTCAATACATCTCAGATCTTGATCAATCCTGATC-T 590
Query 120 CCCTGAGATTCTTGCCTTCAAAGAAAG-TTTACCAAAAGATGGGCTTGCTCTTACTCTTC 178
|||||||||||| | || ||||| | ||||||||||||| | |||||||||||||| |
Sbjct 591 CCCTGAGATTCTGGAATTTAAAGAC-GCTTTACCAAAAGATTGTCTTGCTCTTACTCT-C 648
Query 179 -TTGAGTCTAAACCAAAG-CAGGAAAT-GATCGAGCTGACTACAGGGGATTTCTATCTTC 235
||||||||||||||||| | | |||| ||| ||| | |||| ||||||||||||||||
Sbjct 649 ATTGAGTCTAAACCAAAGTC-GAAAATTGAT-GAGTTTCCTACTGGGGATTTCTATCTTC 706
Query 236 AGTTTCCTAAGAAGACCATCAAAGAAGTCGCTGAGATGTTTGAT 279
||||| |||| |||||||||||||||||| ||||||||||||||
Sbjct 707 AGTTTGCTAAAAAGACCATCAAAGAAGTCTCTGAGATGTTTGAT 750
> AT3G31990.1 | Symbols: | transposable element gene | chr3:12978898-12981090
REVERSE LENGTH=1353
Length=1353
Score = 244 bits (132), Expect = 6e-64
Identities = 195/224 (87%), Gaps = 10/224 (4%)
Strand=Plus/Plus
Query 61 GATGTAAGGAGTATCTCCAATGCTTTCAATACATCTCAGATCTTGATCAATCCAGACATC 120
||||| ||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 451 GATGTTAGGAGTATCTCCAATGCTTTCAATACATCTCAGATCTTGATCAATACTGATATC 510
Query 121 CCTGAGATTCTTGCCTTCAAAGAAAG-TTTACCAAAAGATGGGCTTGCTCTTACTCTTC- 178
|||||||| || | || ||||| | ||||||||||||||| |||||||||||||| |
Sbjct 511 CCTGAGATCCTGGAATTTAAAGAC-GCTTTACCAAAAGATGGTCTTGCTCTTACTCT-CA 568
Query 179 TTGAGTCTAAACCAAAG-CAGGAAAT-GATCGAGCTGAC-TACAGGGGATTTCTATCTTC 235
||||||||||||||||| | |||| | | | ||| | || ||| ||||||||||||||||
Sbjct 569 TTGAGTCTAAACCAAAGTC-GGAAGTTGCT-GAGTT-ACCTACTGGGGATTTCTATCTTC 625
Query 236 AGTTTCCTAAGAAGACCATCAAAGAAGTCGCTGAGATGTTTGAT 279
||||| |||| |||||||| ||||||||| ||||||||||||||
Sbjct 626 AGTTTGCTAAAAAGACCATTAAAGAAGTCTCTGAGATGTTTGAT 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28583229643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5