BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897001
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
AT3G30841.1 | Symbols: | Cofactor-independent phosphoglycerate... 2255 0.0
AT4G09520.1 | Symbols: | Cofactor-independent phosphoglycerate... 1914 0.0
> AT3G30841.1 | Symbols: | Cofactor-independent phosphoglycerate
mutase | chr3:12591392-12593527 FORWARD LENGTH=1722
Length=1722
Score = 2255 bits (1221), Expect = 0.0
Identities = 1401/1490 (94%), Gaps = 4/1490 (0%)
Strand=Plus/Plus
Query 1 ATGGAACAAGAACATGTAGAAGTCAAAAAGAGAGTAGCTTTTGTCCTAATCGATGGTTTA 60
||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 109 ATGGAACAAGATCATGTAAAAGTCAAAAAGAGAGTAGCTTTTGTTCTAATCGATGGTTTA 168
Query 61 GGAGATGTATCAATACCGAAGTTAGGTTACAAAACTCCATTACAAGAAGCAAACATACCT 120
||||||||| ||||||| || |||||||||||||||||||||||| |||||||||||||
Sbjct 169 GGAGATGTAACAATACCAAAACTAGGTTACAAAACTCCATTACAAGCAGCAAACATACCT 228
Query 121 AATCTTGACGCAATTGCTTCAGCTGGAATCAATGGTTTAATGGATCCTGTAGAAGTTGGT 180
||||| ||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 229 AATCTCGACGCAATTGCATCAGCTGGTATCAACGGTTTAATGGATCCAGTAGAAGTTGGT 288
Query 181 TTAGGTTGTGGTAGTGACACTGCTCATCTTTCTCTTATGGGTTATGATCCAAGAGTGTAT 240
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 289 TTAGGTTGTGGTAGTGACACTGCTCATCTTTCTCTCATGGGTTATGATCCAAGAGTATAT 348
Query 241 TATAGAGGTCGTGGTGCGTTTGAGTCTATGGGTGCAGGGTTAGCTATGTCACCTGGTGAT 300
|| | || |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 349 TACCGTGGACGTGGTGCTTTTGAGTCTATGGGTGCAGGTTTAGCTATGTCACCTGGTGAT 408
Query 301 ATAGCTTTCAAGTCTAATTTTGCAACGTTGGATGAGAAATCTGGAGTTGTTGTTAGTAGA 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 409 ATAGCTTTCAAGTCTAATTTTGCAACTTTGGATGAGAAATCTGGAGTTGTTGTTAGTCGA 468
Query 361 AGAGCTGATCGACATTTCGAAGAAGAAGGTCCTATACTTTGTGCAGCTCTTGATGGAATG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 469 AGAGCTGATCGACATTTCGAAGAAGAAGGTCCTATACTTTGTGCAGCTCTTGATGG-GTT 527
Query 421 AAA-CTTCAATCTTTCCCTGAGTATGAAGTGAGAGTCAGATATGCGACGGAGCATAGGTG 479
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 528 AAAGCTTCAATCTTTCCCTGAGTATGAAGTGAGAGTCAGATATGCGACGGAACATCGGTG 587
Query 480 TGGTGTGGTTG-TAAAGGGGCCAAGACTTAGTGGGAATATATCTGGAACAGATCCATTGA 538
|||||| |||| |||| ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 588 TGGTGTTGTTGTTAAA-GGGCCAAGACTTAGTGGGAATATATCTGGCACTGATCCGTTGA 646
Query 539 AAGATAATCGTTTGCTTCTTGAGGCTAAACCTTTGGATGAATCAGAAGAAGCTAATCACA 598
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct 647 AAGATAATCGTTTGCTTCTTGAAGCTAAACCTTTAGATGAATCAGAAGAAGCTACTCACA 706
Query 599 CTGCTAAAGTTGTTAACGAGTTATCAAGAGAGATATCGCACATTCTTGTATCCCACCCGA 658
||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||||
Sbjct 707 CTGCTAAAGTTGTTAACGAATTATCAAGAGAGATATCGCGTATTCTTGTTTCTCACCCGG 766
Query 659 TTAATGCAGAAAGAGCTACACAAGGCAAGAATATTGCGAATCTTGTTCTTTTACGAGGCT 718
|||| ||||| |||||| ||||||||||||||||||| ||||| ||||||||||| || |
Sbjct 767 TTAACGCAGAGAGAGCTGCACAAGGCAAGAATATTGCAAATCTCGTTCTTTTACGTGGTT 826
Query 719 GTGGTATTCGAATCGAGGTACCTCCTTTTCAAGAGAAGCACGGCTTGTGGCCGTGTATGG 778
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 827 GTGGTATTCGAATCGAGGTACCTCCTTTTCATGAGAAGCATGGCTTGTGGCCATGTATGG 886
Query 779 TAGCACCAACAAAGATTATAGCTGGACTTGGTATGTCTCTCGGTATTGACATTCTAGAAG 838
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 887 TAGCACCAACAAAGATTATAGCTGGACTTGGTATGTCGCTCGGTATTGACATTTTAGAAG 946
Query 839 CTCCGGGAGCTACTGGAGATTACCGGACGCTTCTGACATCGAAAGCAATTGCTATAGCCA 898
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 947 CTCCGGGAGCTACTGGAGATTACCGGACGCTTCTGACATCGAAAGCAACTGCTATAGCTA 1006
Query 899 ATGCGCTCTCAGCTCCTTTGAATCCCTGCCCAAATGTTTTTGTACCGGGAGAGGACGGGC 958
|||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1007 ATGCTCTCTCAGCTCCTTTGAATCCCTGCCCTAATGTCTTTGTACCGGGAGAGGACGGGC 1066
Query 959 ACAAACCAGGAAGGTCAGATGGTTATGATTTCGGGTTCCTTCACATAAAGGCTATAGATG 1018
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 ATAAACCAGGAAGGTCAGATGGTTATGATTTCGGGTTCCTTCACATAAAGGCTATAGATG 1126
Query 1019 ATGCTGGTCATGACAAGGCGACAATGTTCAAAGTTCGAGGTTTAGAAGCTGTTGATAAGG 1078
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 ATGCAGGTCATGATAAGGCGACAATGTTCAAAGTTCGAGGTTTAGAAGCTGTTGATAAGG 1186
Query 1079 CAATTCGTCAGCTTGCTAAGCTTTTATGGCAAGCTGAATCTTCTACAAATTACCAGTATT 1138
| || |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1187 CGATACGTCAGCTTGCTAAGCTTTTATGGCAAGCTGAGTCTTCTACACATTACCAGTATT 1246
Query 1139 TCTTGTGTGTGACCGGTGATCATTCAACTCCTGTTGAGTATGGGGACCACAGCTTCGAGC 1198
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1247 TCTTGTGTGTGACCGGTGATCATTCAACTCCTGTTGAGTATGGAGACCACAGCTTTGAGC 1306
Query 1199 CTGTCCCATTCACAATGTGTCGATTAAGTGACTTTGTGAGCGCGGTTGGAGGAGAATCAG 1258
||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct 1307 CTGTCCCATTCACAATGTGCCGGTTAAGGGACTTTGTGAGCGCGGTGGGAGGAGAATCAG 1366
Query 1259 CCTTATTAGAGACATCTTTGGACCCTTTTCCACTTCCAACAGTTGTGGAATCAAGCGAAG 1318
|| || ||||||| |||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 1367 CCGTACTAGAGACGTCTTTGGACCCTTTTCCACTTCCAACGGTTGTGGAATCAGGTGAAG 1426
Query 1319 ATGTCACCAAACATGAGGAAGACAGTGGGAGGAGGGAAACTCCTCCGGCAATTGGTGGAG 1378
|||| |||||||| |||||||| ||||||||||||||| |||||| ||||||||||||||
Sbjct 1427 ATGTTACCAAACAAGAGGAAGAGAGTGGGAGGAGGGAAGCTCCTCTGGCAATTGGTGGAG 1486
Query 1379 ATTCAGTTGCAGAGTTGAATGAGATTGCAGCTGCAAGAGGATGTCTTGGCCGTTTCCATG 1438
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1487 ATTTAGTTGCAGAGTTGAATGAGGTTGCAGCTGCAAGAGGATGTCTTGGCCGTTTCCATG 1546
Query 1439 GCGGTGAAATGATGGGAGTCATCACTAAGTTTCTTAAACTAGAGGTATGA 1488
|||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1547 GCGGTGAAATGATGGGAGTCATCACTAACTTTCTTAATCTAGAGGTATGA 1596
> AT4G09520.1 | Symbols: | Cofactor-independent phosphoglycerate
mutase | chr4:6024896-6027055 REVERSE LENGTH=1652
Length=1652
Score = 1914 bits (1036), Expect = 0.0
Identities = 1325/1465 (90%), Gaps = 17/1465 (1%)
Strand=Plus/Plus
Query 18 AGAAG-TCAAAAAGAGAGTAGCTTTTGTCCTAATCGATGGTTTAGGAGATGTATCAATAC 76
||||| ||||||| ||||| || ||| | ||||| |||||||| ||||||||||||||||
Sbjct 105 AGAAGTTCAAAAA-AGAGTTGCCTTTATACTAATTGATGGTTTGGGAGATGTATCAATAC 163
Query 77 CGAAG-TTAGGTTACAAAACTCCATTACAAGAAGCA-AACATACCTAATCTTGACGCAAT 134
| ||| |||||||||||||| ||||| |||| |||| || |||||||| ||||| |||||
Sbjct 164 C-AAGATTAGGTTACAAAACACCATTGCAAGCAGCAGAA-ATACCTAACCTTGATGCAAT 221
Query 135 TGCTTCAGCTGGAATCAATGGTTTAATGGATCCTGTAGAAGTTGGTTTAGGTTGTGGTAG 194
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 222 TGCTTCAGCTGGAATCAATGGTTTAATGGATCCAGTTGAAGTTGGATTAGGTTGTGGTAG 281
Query 195 TGACACTGCTCATCTTTCTCTTATGGGTTATGATCCAAGAGTGTATTATAGAGGTCGTGG 254
||||||||||||||||||||| |||||||||||||||||||||||||| | || |||||
Sbjct 282 TGACACTGCTCATCTTTCTCTAATGGGTTATGATCCAAGAGTGTATTACCGTGGACGTGG 341
Query 255 TGCGTTTGAGTCTATGGGTGCAGGGTTAGCTATGTCACCTGGTGATATAGCTTTCAAGTC 314
|||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 342 CGCGTTTGAATCTATGGGTGCAGGATTAGCTATGTCACCTGGTGACATAGCTTTCAAGTC 401
Query 315 TAATTTTGCAACGTTGGATGAGAAATCTGGAGTTGTTGTTAGTAGAAGAGCTGATCGACA 374
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 402 AAATTTTGCAACTTTGGATGAGGATTCTGGAGTTGTTGTTAGTAGAAGAGCTGATCGACA 461
Query 375 TTTCGAAGAAGAAGGTCCTATACTTTGTGCAGCTCTTGATGGAATGAAACTTCAATCTTT 434
||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||| ||
Sbjct 462 TTTCGAAGAAGAAGGACCTATACTTTGTGCTGCTCTTGATGGAATGAAGCTTCCATCATT 521
Query 435 CCCTGAGTATGAAGTGAGAGTCAGATATGCGACGGAGCATAGGTGTGGTGTGGTTGTAAA 494
||||||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct 522 CCCTGAGTATGAAGTTAGAGTCAGATATGCAACGGAACATAGATGTGGAGTGGTTGTAAA 581
Query 495 GGGGCCAAGACTTAGTGGGAATATATCTGGAACAGATCCATTGAAAGATAATCGTTTGCT 554
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 582 AGGGCCAAAACTTAGTGGGAATATATCTGGAACAGATCCATTGAAGGATAATCGTTTGCT 641
Query 555 TCTTGAGGCTAAACCTTTGGATGAATCAGAAGAAGCTAATCACACTGCTAAAGTTGTTAA 614
|||||| |||||||||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct 642 TCTTGAAGCTAAACCTTTGGATGAATCAGAAGAAGCTAATCACACAGCCAAAGTCGTGAA 701
Query 615 CGAGTTATCAAGAGAGATATCGCACATTCTTGTATCCCACCCGATTAATGCAGAA-AGAG 673
||| ||||| | |||||||||| ||||||||| ||||||||| |||||| | || ||||
Sbjct 702 CGAATTATCCCGGGAGATATCGCGCATTCTTGTTTCCCACCCGGTTAATGTA-AAGAGAG 760
Query 674 CTACACAAGGCAAGAATATTGCGAATCTTGTTCTTTTACGAGGCTGTGGTATTCGAATCG 733
|| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 761 CTGCACAAGGCAAGAATATTGCTAATCTTGTTCTTTTAAGAGGCTGTGGTATTCGAATCG 820
Query 734 AGGTACCTCCTTTTCAAGAGAAGCACGGCTTGTGGCCGTGTATGGTAGCACCAACAAAGA 793
|||| ||||||||||| |||||||| || |||||||||||||||||||||||||| ||||
Sbjct 821 AGGTTCCTCCTTTTCACGAGAAGCATGGTTTGTGGCCGTGTATGGTAGCACCAACGAAGA 880
Query 794 TTATAGCTGGACTTGGTATGTCTCTCGGTATTGACATTCTAGAAGCTCCGGGAGCTACTG 853
||||||| |||||||||||||| || |||||||| ||||| ||||||| |||||| ||||
Sbjct 881 TTATAGCCGGACTTGGTATGTCCCTTGGTATTGATATTCTTGAAGCTCTGGGAGCCACTG 940
Query 854 GAGATTACCGGACGCTTCTGACATCGAAAGCAATTGCTATAGCCAATGCGCTCTCAGCTC 913
||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||
Sbjct 941 GAGATTACCGGACGCTTCTCACATCGAAAGCGATTGCTATAGCGAATGCGCTTTCAGCTC 1000
Query 914 CTTTGAATCCCTGCCCAAATGTTTTTGTACCGGGAGAGGACGGGCACAAACCAGGAAGGT 973
|||||||||||||||||||||| |||| ||| | |||||||||||| ||||| |||||||
Sbjct 1001 CTTTGAATCCCTGCCCAAATGTCTTTGAACCAGCAGAGGACGGGCATAAACCGGGAAGGT 1060
Query 974 CAGATGGTTATGATTTCGGGTTCCTTCACATAAAGGCTATAGATGATGCTGGTCATGACA 1033
|||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1061 CAGATGGTTACGATTTCGGCTTCCTTCACATTAAGGCTATAGATGATGCAGGTCATGACA 1120
Query 1034 AGGCGACAATGTTCAAAGTTCGAGGTTTAGAAGCTGTTGATAAGGCAATTCGTCAGCTTG 1093
|||| ||| |||||||||||||||| || |||||||| ||||| || || |||||||| |
Sbjct 1121 AGGCTACATTGTTCAAAGTTCGAGGCTTGGAAGCTGTGGATAAAGCGATACGTCAGCTCG 1180
Query 1094 CTAAGCTTTTATGGCAAGCTGAATCTTCTACAAATTACCAGTATTTCTTGTGTGTGACCG 1153
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1181 CTAAGCTTCTATGGCAAGCTGAATCTTCTTCAAATTACCAGTATTTCTTGTGTGTGACTG 1240
Query 1154 GTGATCATTCAACTCCTGTTGAGTATGGGGACCACAGCTTCGAGCCTGTCCCATTCACAA 1213
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1241 GTGATCATTCTACTCCAGTTGAGTATGGAGACCACAGCTTCGAGCCTGTCCCATTCACAA 1300
Query 1214 TGTGTCGATTAA-GTGACTTTGTGAGCGCGGTTGGAGGAGAATCAGC-CTTATTAGAGAC 1271
|||| || |||| | ||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 1301 TGTGCCGGTTAAAG-GACTTTGTGAGAGCGGTTGGAGGAGAATCAGCTCT-ATTAGAGAC 1358
Query 1272 ATCTTTGGACCCTTTTCCACTTCCAACAGTTGTGGAATCAAGCGAAGATGTCACC--AAA 1329
|||||| |||||||||||||||||||| | | | | ||| || ||| |||||| | |||
Sbjct 1359 ATCTTTAGACCCTTTTCCACTTCCAACGGATATAGCATCCAGTGAAAATGTCATCGGAAA 1418
Query 1330 C-ATGAGGAAGACAGTGGGAGGAGGGAAACTCCTCCGGCAATTGGTGGAGATTCAGT-TG 1387
| || |||||| |||||||||||||| || ||| ||| ||| ||||||||||||| |
Sbjct 1419 AGAAGAAGAAGACTGTGGGAGGAGGGAAGCTTCTCTGGCGATTAGTGGAGATTCAGTCT- 1477
Query 1388 CAGAGTTGAATGAGATTGCAGCTGCAAGAGGATGTCTTGGCCGTTTCCATGGCGGTGAAA 1447
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1478 CAGAGTTGAACGAGATTGCAGCTGCAAGAAGATGTCTTGGCCGTTTCCATGGCGGTGAAA 1537
Query 1448 TGATGGGAGTCATCACTAAGTTTCT 1472
|||||||||| ||||| ||||||||
Sbjct 1538 TGATGGGAGTTATCACCAAGTTTCT 1562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73393196790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5