BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897003
Length=2787
Score E
Sequences producing significant alignments: (Bits) Value
AT3G30875.1 | Symbols: | pseudogene, putative multidrug resist... 1823 0.0
> AT3G30875.1 | Symbols: | pseudogene, putative multidrug resistance
protein, similar to multidrug resistance protein 1 homolog
GB:T06165 GI:7442649 from (Hordeum vulgare); blastp match
of 54% identity and 0. P-value to GP|2292907|emb|CAA71179.1||Y10099
P-glycoprotein homologue {Hordeum vulgare subsp.
vulgare} | chr3:12647725-12654422 REVERSE LENGTH=6698
Length=6698
Score = 1823 bits (987), Expect = 0.0
Identities = 1204/1310 (92%), Gaps = 9/1310 (1%)
Strand=Plus/Plus
Query 988 GTGGTGGCGCATAAGCTTTCAACAGTTAGAGGAGCCAATATCATTGCTATGTTAGAAAAT 1047
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2295 GTGGTGGCACATAAGCTTTCAACAGTTAGAGGAGCAAATATCATTGCCATGTTAGAAAAT 2354
Query 1048 GGTTCCGTTAAAGAACTAGGTTCTCATGAAGATTTGATGACGAATAACAACCATTATGCA 1107
|||||||||| |||| | ||||||||||||||||||||||| || |||||||||||||||
Sbjct 2355 GGTTCCGTTAGAGAATTGGGTTCTCATGAAGATTTGATGACAAAGAACAACCATTATGCA 2414
Query 1108 AAACTCGTAAACCTTCAAAGACAATGCGGTCATGAACATCGACAGGATCTTCAAGATAGA 1167
||||||||||| ||||||||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 2415 AAACTCGTAAAACTTCAAAGACAATTCGGTCATGAACATCAACAAGATCTTCAAGATAGG 2474
Query 1168 GTTAAAACTCCTGAGATACAACAACGTTGGTCTACTATGAACTGTGTCAATAGGCTAAGC 1227
|| || | |||||||||||||||||||||||| ||||||||| |||||| ||||||||||
Sbjct 2475 GTCAACAGTCCTGAGATACAACAACGTTGGTCGACTATGAACAGTGTCATTAGGCTAAGC 2534
Query 1228 AGA-AGGTCATCTCCTGATCTCATTGATTCTCCTTA-CCCATTGGAAAGCATTAACACAG 1285
| | |||||||||||||||||||||| |||||| || | ||||||| |||| | |||||
Sbjct 2535 A-ATAGGTCATCTCCTGATCTCATTGTTTCTCC-TATCACATTGGAGAGCAATCACACAA 2592
Query 1286 CCAAAATCAATGATAATCA-CCCTTCTACTTCATTCACCCGACTTCTTCCATTGGTTTCC 1344
|||| |||||||| ||| | |||||||||||||||||| |||||||||||||| |||||
Sbjct 2593 CCAAGATCAATGAAAAT-ATCCCTTCTACTTCATTCACTCGACTTCTTCCATTTGTTTCT 2651
Query 1345 CCTGAGTGGAAGTCTTCTCTTGTCGGTTGCATTTCAGCTGCAACATTTGGTGCAATCCAA 1404
|||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||
Sbjct 2652 CCTGAGTGGAAGTCTTCTCTCGTCGGTTGCATATCAGCAACTACATTTGGTGCAATCCAA 2711
Query 1405 CCGGTTTATGCCTTAACCATTGGCGGTATGATCTCCGCATTTTTTGCAAAAAGCTCACAG 1464
|||||||||||||||| |||||||||||||| || |||||||| ||||||||||| ||
Sbjct 2712 CCGGTTTATGCCTTAAGTATTGGCGGTATGATATCAGCATTTTTCGCAAAAAGCTCTCAA 2771
Query 1465 GAAATGCAGGCTAAGATACGA-ATTTACTCCTTAATCTTCACTTCCCTCACCTTTCTCTC 1523
|||||||| | |||||||| | || ||||| |||||||||| |||||| |||||||||||
Sbjct 2772 GAAATGCAAGATAAGATAC-ACATCTACTCTTTAATCTTCATTTCCCTTACCTTTCTCTC 2830
Query 1524 CATCACCCTTAATCTCCTTCAGCATTATAGTTTTGCAAAAATGGGTGAAAGGCTAATGCA 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2831 CATCACCCTTAATCTCCTTCAGCATTATAGTTTTGCAAAAATGGGTGAAAGGCTAATGCA 2890
Query 1584 AAGACTTCGGTTGAAAATGCTCGAAAAAATCTTTACCTTTGAACCTGCCTGGTTTGATGT 1643
| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 2891 ACGACTTCGGTTGAAAATGCTTGAAAAAATCTTTACCTTTGAACCTGCATGGTTTGATGT 2950
Query 1644 GGAAGAGAACTTTAGTGGTGAGCTTTGTTCAAGGCTTAGTAATGAAGTGTCCATTGTGAA 1703
|||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 2951 GGAAGAGAACTTTACCAGTGAGATTTGTTCAAGGCTTAATAATGAAGTGTCCATTGTGAA 3010
Query 1704 GTCCTTAGTAGCCGACAGACTTTCGTTGCTTGTCCAGACCATTTCAGGTGTCACAATCGC 1763
||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||
Sbjct 3011 GTCCTTAGTAGCCGACAGAATCTCCTTACTTGTCCAGACCATTTCAGGTGTCACAATCGC 3070
Query 1764 AATGATTATAGGTCTACTACTTTCTTGGAAACTCGCGTTGGTGATGATCGCGGTCCAGCC 1823
|||||| |||||||||||| |||||||||||||||||||||| ||||||||||| |||||
Sbjct 3071 AATGATCATAGGTCTACTAATTTCTTGGAAACTCGCGTTGGTAATGATCGCGGTACAGCC 3130
Query 1824 TCTCTCTATCCTCTGCTTCTACACCAAAAAAGTTTTGCTCTCCAACATTTCCCACAATTA 1883
||||||||||| |||||||| |||||||| |||||||||||||| |||||| |||||||
Sbjct 3131 ACTCTCTATCCTTTGCTTCTATACCAAAAAGGTTTTGCTCTCCAAAATTTCCAACAATTA 3190
Query 1884 TGCCTATGCACAAAACCGTAGCTCACAAATTGCATCGGAAGCTATTTACAACCACAAAAT 1943
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 3191 CGCCTATGCACAAAACCGTAGCTCACAGATTGCATCAGAAGCTATTTACAACCACAAAAT 3250
Query 1944 TATTACATCCTTAGGGTCTACAAAGAAGATCATAGAAATATTTGATAAGGCTCAATATAA 2003
| ||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |
Sbjct 3251 TGTTACATCCTTAGGGTCTACGAAGAAGATCATAGAAATATTTGACAATGCTCAATATGA 3310
Query 2004 GGCGAAAAGAAAGGGTAGGAAGGCAGCATGGCTTGCAGGCTTTGGGATGGGGTCGGCACA 2063
||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 3311 GGCAAAAAGAAAGGGTAGGAAGGCAGCTTGGCTCGCAGGCTTTGGGATGGGGTCTGCACA 3370
Query 2064 GTGCCTAACCTTCTTGACATGGGCATTAGACTTTTGGTATGGAGGAGTGTTGGTTCAAAA 2123
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3371 ATGCCTAACATTCTTGACATGGGCATTAGACTTTTGGTATGGAGGAGTGTTGGTTCAAAA 3430
Query 2124 GGGGGAAATCTCGGCCGGGGATGTATTCAAGACATTCTTTGTTTTGGTAAGCACCGGCAA 2183
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3431 AGGGGAAATATCGGCCGGGGATGTATTCAAGACATTCTTTGTTTTGGTAAGCACTGGCAA 3490
Query 2184 GGTTATTGCGGAAGCAGGAAGCATGACTTCTGACCTCGCCAAGGGCTCTGCCGCCATTTC 2243
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 3491 GGTTATTGCGGAAGCAGGAAGCATGACTTCTGACCTTGCCAAAGGCACTGCCGCCATTTC 3550
Query 2244 TTCCGTTTTCAAGATCCTTGACCGTCCTTCATCTCAAGAAAAT-ACAAAC 2292
||| |||||||| |||||||| ||||||||||| || | || | ||||||
Sbjct 3551 TTCTGTTTTCAATATCCTTGATCGTCCTTCATCGCATGTAAGTTACAAAC 3600
Score = 719 bits (389), Expect = 0.0
Identities = 433/455 (95%), Gaps = 0/455 (0%)
Strand=Plus/Plus
Query 298 GTGCCCACATTCTTGATGCACATATCAGTTTTCATCACTGGCCTTCTGTTTTCGGCATAC 357
||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 886 GTGCCCATATTTTTGATGCACATATCAGTTTTCATCACTGGCCTTGTGTTTTCGGCATAC 945
Query 358 TTTTCATGGAGATTAACCGTCGTGGCCATCCCAACACTTGTTCTTCTTTTAATCCCAGGG 417
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 946 TTTTCATGGAGATTAACCGTGGTGGCCATCCCAACACTTGTTCTTCTTCTAATCCCAGGG 1005
Query 418 TTGATCTATGGCAAATACCTTGTTCACTTATCTAAGAAATCTTTCAAAGAACACGCAAAA 477
|||||||||||||||||||||||||||||||| ||||||||||| |||||| || | |||
Sbjct 1006 TTGATCTATGGCAAATACCTTGTTCACTTATCAAAGAAATCTTTTAAAGAATACACCAAA 1065
Query 478 GCAAACTCCATCGTGGAACAAGCTCTAAGCTCCTTCAAGACCATTCTTTCATTCACAGCC 537
|||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 1066 GCAAACTCCATCGTGGAACAGGCTCTAAGCTCCATCAAGACAATTCTTTCATTCACAGCC 1125
Query 538 GAGACTCAAATCATCAAGAAATACTCAGAGGTCTTGGAAAGACACAAAAAGCTTGGGTTA 597
|| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1126 GAAACTCAAATAATCAAGAAATACTCGGAAGTCTTGGAAAGACACAAAAAGCTTGGGTTA 1185
Query 598 AAGCAAGGTCTCGCCAAAGGTTTAGCTGTGGGAAGCTCAGGGATTTCATTCACCATTTGG 657
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1186 AAGCAAGGTCTTGCCAAAGGTTTAGCCGTGGGAAGCTCAGGGATTTCATTCACCATTTGG 1245
Query 658 GCCTTTCTTGCTTGGTACGGAAGCAGATTGGTGATGCACAAACAAGAAACCGGTGGACGC 717
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 GCTTTTCTTGCTTGGTACGGAAGCAGATTGGTGATGCACAAACAAGAAACCGGTGGACGC 1305
Query 718 ATTTATGCAGCCGGGATCTCCTTCGTCTTGGGTGG 752
||||||||||| || ||||||||||||||||||||
Sbjct 1306 ATTTATGCAGCTGGTATCTCCTTCGTCTTGGGTGG 1340
Score = 429 bits (232), Expect = 7e-119
Identities = 293/322 (91%), Gaps = 6/322 (2%)
Strand=Plus/Plus
Query 2281 GAAAATACAAACCATGGAGCAAAA-ATTGAGA-AACTA-ATAGGGCGGATAGAACTGAAG 2337
||||||||||||||||||| |||| || | || || || | ||| || ||||||||||||
Sbjct 3692 GAAAATACAAACCATGGAG-AAAAGATGGGGACAA-TACA-AGGCCGAATAGAACTGAAG 3748
Query 2338 AATATCGATTTTTCTTACCCTAACCAGCCTAGTATTCCAGTGCTTCGACAATTTTCCTTG 2397
|||||||||||||| |||||||||| ||||||||||| ||||||||| | |||||||||
Sbjct 3749 AATATCGATTTTTCATACCCTAACCGGCCTAGTATTCTGGTGCTTCGAGATTTTTCCTTG 3808
Query 2398 GACATCAAGCCCGGGACAAGCATTGGATTGGTCGGTATATCAGGATGTGGTAAATCAACA 2457
|| |||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 3809 GATATCAAGCCTGGGACAAGCATTGGATTGGTTGGTACATCAGGATGTGGTAAATCAACA 3868
Query 2458 GTGATAGCTTTGATCCAACGTTTCTACGATGTGGAAATAGGTTGTGTGAAAATAGACAGT 2517
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 3869 GTGATAGCTTTGATCCAACGCTTCTATGATGTGGAAATAGGTTGTGTGAAAATAGATAGT 3928
Query 2518 GTAGATTTGCGAGATATAGATATTAAATGGTATAGAAAACATACTGCACTAGTGAGCCAA 2577
| | |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 3929 GAAAATTTGCGAGATATAAATATCAAATGGTATAGAAAACATACTGCTCTAGTGAGCCAA 3988
Query 2578 GAGCCAGTTGTTTACTCTGGAA 2599
||||||||||||||||| ||||
Sbjct 3989 GAGCCAGTTGTTTACTCAGGAA 4010
Score = 313 bits (169), Expect = 7e-84
Identities = 220/244 (90%), Gaps = 5/244 (2%)
Strand=Plus/Plus
Query 748 GGTGGCATCTCTCTAGGGACGGCACTGACTGAAATAAGATATTTTTCGGAGGCTTCAGTT 807
||| ||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1416 GGT-GCAGCTCTCTAGGGACGGCACTGACTGAAATAAGATACTTTTCCGAGGCTTCAGTT 1474
Query 808 GCAGCAGCTCGAATATGTTCAAGGATTGATAGAATTTCAGAGATAGATGGTGAGGATACA 867
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1475 GCGGCAGCTCGAATATGTTCAAGAATTGATAGAATTTCAGAGATAGATGGTGAGGATACA 1534
Query 868 AAGAAAGGATTCATACCAGGAGATAAAATGAAGGGAAGAGTAGAATTTGAGCATGTAACT 927
||||||||||||||||| ||||| |||||||||||||||||||| ||||| | ||||||
Sbjct 1535 AAGAAAGGATTCATACCCGGAGAGAAAATGAAGGGAAGAGTAGAGTTTGAACGTGTAACC 1594
Query 928 TTCA-TATATCCTTGTCGACC-GAAATCAATAATTCTCAAGGATTTCACTCTTACTGCTG 985
|| | |||||| || ||| || |||| || |||||||||| || |||||||| |||| ||
Sbjct 1595 TT-AGTATATCTTTCTCGTCCAGAAACCA-TAATTCTCAAAGACTTCACTCTCACTGTTG 1652
Query 986 ATGT 989
||||
Sbjct 1653 ATGT 1656
Score = 252 bits (136), Expect = 2e-65
Identities = 169/185 (91%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 2604 GATCATGGCTAACCGGAAGATGACAACAGTAGTAGTGGCTCACCGCCTCAACACCTTG-A 2662
||||||||||| ||| || ||||| || ||||||||||||||||| || ||||||||| |
Sbjct 4544 GATCATGGCTAGCCGAAATATGACTACTGTAGTAGTGGCTCACCGTCTGAACACCTTGAA 4603
Query 2663 AAATATTGGATTGTATTGCAATGATCGCAGATGGAACCGTAATGGAGACAGGGAGTTACG 2722
|||| ||||||||||||||| |||||| ||||||||| ||||| ||||||||||||||||
Sbjct 4604 AAAT-TTGGATTGTATTGCATTGATCGTAGATGGAACTGTAATAGAGACAGGGAGTTACG 4662
Query 2723 ACCACTTGAAAAATATTGGAGGCCAGTTCTCTAGACTTGTTCATGCTCATGATCTTAAAT 2782
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 4663 ACCACTTGAAAAATATTGGAGGCCAGTTCTCTAGGCTTGCACATGCTCATGATCTTAAAT 4722
Query 2783 CTTGA 2787
|||||
Sbjct 4723 CTTGA 4727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138460762680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5