BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897008
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT1G43720.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 717 0.0
AT3G44030.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.... 520 2e-146
AT1G35820.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 424 1e-117
AT3G42870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 414 8e-115
AT3G30520.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 412 3e-114
AT2G07490.1 | Symbols: | transposable element gene | chr2:3120... 84.2 2e-15
AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.... 82.4 9e-15
> AT1G43720.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G42870.1);
Has 51 Blast hits to 51 proteins in 3 species: Archae - 0;
Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 49; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:16495080-16496078
FORWARD LENGTH=945
Length=945
Score = 717 bits (388), Expect = 0.0
Identities = 600/699 (86%), Gaps = 27/699 (4%)
Strand=Plus/Plus
Query 118 ATGCAACGATGTTTCGTATTACATGATGTTCAATCACAATCTGAACACTCTGCTCGTCAA 177
|||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1 ATGCAACGATGTCTCGTATTACATGATGTTCAATCACAATCTCAACATTCTGCTCGTCAA 60
Query 178 AGAAGAGAACAATTAATACACGAGCATACAGTTGATGAAGAGGGCCATGATGACTCAGAC 237
|||||||||||||| || ||||||||| |||||||||||| || | ||| ||||||||
Sbjct 61 AGAAGAGAACAATTGATCCACGAGCATGGAGTTGATGAAGAAGGTGAAGATTACTCAGAC 120
Query 238 ACTGATAGTGGTGACTTGGCACAAACAAAGGTTCCTGATACGCAAGAAGAAGAAGAAGTG 297
| |||||||||| || || || || | |||||||||| |||||||||||||||||||||
Sbjct 121 AGTGATAGTGGTAACATGCCAGAAGCCGAGGTTCCTGAAACGCAAGAAGAAGAAGAAGTG 180
Query 298 TATCGTGTTACTATTGATGATGATGAAACGTTCAAATATTCCGCT--TC-CCGAAGCCAA 354
||||||||||| ||||||||||||| || || | | ||||| | |||| |
Sbjct 181 TATCGTGTTACCATTGATGATGATG-AA---TC--A-A--CCGCTAGACGTGGAAG-TAG 230
Query 355 TGC-C-GAGATCTGGGA-GAAGCTCAAGAGTTTCTATTGGAAGTTGTTCACGAGGAAATC 411
||| | |||||| ||| |||||||| ||||||||| |||||| |||||||| ||| ||
Sbjct 231 TGCACAAAGATCT-GGAGGAAGCTCACTAGTTTCTATAGGAAGTGGTTCACGAAGAAGTC 289
Query 412 GTAGGCGAAAAATCCTTTGAAACAACAATACAAGACACCATCGCTGGCTAT-AGAGAATT 470
||| || | ||||||||||||||||||||||||||| |||| |||||| | ||||||||
Sbjct 290 ATAGACG-ACAATCCTTTGAAACAACAATACAAGACAGCATCACTGGCT-TCAGAGAATT 347
Query 471 CCAAAGACAAAGTTTTCAACAACTTCG-CCTTGGTGGTTTTGACCAAGATGATTACGATG 529
|||| |||||||||||||||||||||| || ||||| |||||| ||||||||||||||||
Sbjct 348 CCAACGACAAAGTTTTCAACAACTTCGTCC-TGGTGCTTTTGATCAAGATGATTACGATG 406
Query 530 AATTTAAAAAGGCGGAAGCGATATTCATTGCACTAGACCTTCCCAAGCACACAAGATTTT 589
||||||||||||||||||||||||| || || ||| | ||||| |||||||| ||||||
Sbjct 407 AATTTAAAAAGGCGGAAGCGATATTTATCGCGCTAAATCTTCCTAAGCACACTAGATTTC 466
Query 590 ATTGGGCATGCATTAATGCACTTAAAGAACTAGTATTTTGGCGTAAATATTTCATTGACA 649
||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||| |
Sbjct 467 ATTGGGCATGCATTAATGCACTTAAGGAGCTAGTATTTTGGCGTAAGTATTTGATTGATA 526
Query 650 TATCTAG-AAGCAGTAACGAGGATAAGCTACAACTATTAGAAGCTATGACTGGTGTCTCA 708
|| || | ||||| ||||||||||| | ||||| |||||||||||||||||||| |||
Sbjct 527 TAACT-GCAAGCACCGACGAGGATAAGGTCCAACTGTTAGAAGCTATGACTGGTGTTTCA 585
Query 709 CGAAAAAACCAAGATGTGCCAAAACAGTTAGGTCCATGCCATTCATTTGGGAGCCCGA-A 767
|| || ||||||||||||||||||||||||||| || |||||||||||||||| || | |
Sbjct 586 CGTAACAACCAAGATGTGCCAAAACAGTTAGGTTCAAGCCATTCATTTGGGAGTCC-ACA 644
Query 768 TTTAGGAGGTCTATCATATGGAAGTCCATCTTCT-TGGG 805
|| ||||||| |||||| |||||||||||| ||| ||||
Sbjct 645 TTCAGGAGGTATATCATCTGGAAGTCCATCCTCTGTGGG 683
> AT3G44030.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.1,
blastp match of 40% identity and 8.4e-38 P-value to GP|21740634|emb|CAD40195.1||AL606611
OSJNBb0043H09.1 {Oryza sativa
(japonica cultivar-group)} | chr3:15803993-15806948 FORWARD
LENGTH=2956
Length=2956
Score = 520 bits (281), Expect = 2e-146
Identities = 395/448 (88%), Gaps = 15/448 (3%)
Strand=Plus/Plus
Query 360 AGATCTGGGA-GAAGCTCA-AGAGTTTCTATTGGAAGTTGTTCACGAGGAAATCGTAGGC 417
|||||| ||| |||||||| | |||||||||||||||| |||||||||||| ||| | |
Sbjct 930 AGATCT-GGAGGAAGCTCACA-AGTTTCTATTGGAAGTGGTTCACGAGGAAGTCGGCGAC 987
Query 418 GAAAAATCCTTTGAAACAACAATACAAGACACCATCGCTGGCTAT-AGAGAATTCCAAAG 476
| | ||||||||||||||||||||||||||| |||| ||||| | |||||||||||| |
Sbjct 988 G-ACAATCCTTTGAAACAACAATACAAGACAGCATCATTGGCT-TCAGAGAATTCCAACG 1045
Query 477 ACAAAGTTTTCAACAACTTCGCCT-TGGTGGTTTTGACCAAGATGATTACGATGAATTTA 535
||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 1046 ACAAAGTTTTCAACAACTTCG-TTCTGGTGCTTTTGACCAAGATGATTACGATGAATTTA 1104
Query 536 AAAAGGCGGAAGCGATATTCATTGCACTAGACCTTCCCAAGCACACAAGATTTTATTGGG 595
|||| |||||||||||||| || || ||||| |||||| ||||||| |||||| ||||||
Sbjct 1105 AAAAAGCGGAAGCGATATTTATCGCGCTAGATCTTCCCTAGCACACTAGATTTCATTGGG 1164
Query 596 CATGCATTAATGCACTTAAAGAACTAGTATTTTGGCGTAAATATTTCATTGACATATCTA 655
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||
Sbjct 1165 CATGCATTAATGCACTTAAAGAGCTAGTATTTTGGCGTAAGTATTTCATTGATATAGCT- 1223
Query 656 G-AAGCAGTAACGAGGATAAGCTACAACTATTAGAAGCTATGACTGGTGTCTCACGAAAA 714
| ||||| | ||||||||||| ||||||| ||||||||||||| |||||| ||||| ||
Sbjct 1224 GCAAGCACTGACGAGGATAAGGTACAACTGTTAGAAGCTATGAGTGGTGTTTCACGCAAC 1283
Query 715 AACCAAGATGTGCCAAAACAGTTAGGTCCATG-CCATTCATTTGGGAGCCC-GAATTTAG 772
||||||||| ||||||||||||||||| || | ||||||||||||||| || || || ||
Sbjct 1284 AACCAAGATATGCCAAAACAGTTAGGTTCA-GACCATTCATTTGGGAGTCCAGA-TTCAG 1341
Query 773 GAGGTCTATCATATGGAAGTCCATCTTC 800
||||| |||||| |||||||||||||||
Sbjct 1342 GAGGTATATCATCTGGAAGTCCATCTTC 1369
Score = 331 bits (179), Expect = 8e-90
Identities = 246/278 (88%), Gaps = 6/278 (2%)
Strand=Plus/Plus
Query 64 GGATGCAAATTAACAAAAAGCTTGAACCGAAAACCGCCTG-AGTTTTGGGACGTGATGCA 122
||||||||||||||||||||||||||||||||||| |||| | ||||||||||| |||||
Sbjct 585 GGATGCAAATTAACAAAAAGCTTGAACCGAAAACCACCTGTA-TTTTGGGACGTAATGCA 643
Query 123 ACGATGTTTCGTATTACATGATGTTCAATCACAATCTGAACACTCTGCTCGTCAAAGAAG 182
||||||| ||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 644 ACGATGTCTCGTATTACATGATGTTCAATCACAATCTCAACATTTTGCTCGTCAAAGAAG 703
Query 183 AGAACAATTAATACACGAGCATACAGTTGATGAAGAGGGCCATGATGACTCAGACACTGA 242
||||||||| || ||||||||| |||||||||||| || | ||| ||||||| | |||
Sbjct 704 AGAACAATTGATCCACGAGCATGGAGTTGATGAAGAAGGTGAAGATTACTCAGATAGTGA 763
Query 243 TAGTGGTGACTTGGCACAAAC-AAAGGTTCCTGATACGCAAGAAGAAGAAGAAGTGTATC 301
|||||| || || ||||||| |||| ||||||| |||| ||||||||||||||||||||
Sbjct 764 CAGTGGTAACATGCCACAAACCAAAG-TTCCTGAAACGCTAGAAGAAGAAGAAGTGTATC 822
Query 302 GTGTTACTATTGATGATGATGAAACGTTC-AAATATTC 338
||||||| |||||||||||||||| ||| ||| ||||
Sbjct 823 GTGTTACCATTGATGATGATGAAATATTCCAAA-ATTC 859
> AT1G35820.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G30520.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:13308119-13309257 REVERSE LENGTH=864
Length=864
Score = 424 bits (229), Expect = 1e-117
Identities = 305/342 (89%), Gaps = 4/342 (1%)
Strand=Plus/Plus
Query 3 GGTTGATCCTGATACATGTATGATACATGCATCTGGCGCATGGTGGACACAACAAGAGTT 62
||||||||||||||||| | | ||| ||||||||| |||||||||||| ||||||||||
Sbjct 78 GGTTGATCCTGATACATCTTTCATAAATGCATCTGACGCATGGTGGACTGAACAAGAGTT 137
Query 63 TGGATGCAAATTAACAAAAAGCTTGAACCGAAAACCGCCTG-AGTTTTGGGACGTGATGC 121
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 138 TGGATGCAAATTAACAAAAAGCTTGAACCGAAAACCGCCTGTA-TTTTGGGACGTGATGC 196
Query 122 AACGATGTTTCGTATTACATGATGTTCAATCACAATCTGAACACTCTGCTCGTCAAAGAA 181
|||||||| ||||| ||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 197 AACGATGTCTCGTAGTACATGATGTTCAATCACAATCTCAACATTCTGCTCGTCAAAGAA 256
Query 182 GAGAACAATTAATACACGAGCATACAGTTGATGAAGAGGGCCATGATGACTCAGACACTG 241
|||||||||| || ||||||||| |||||||||||| || | ||| ||||||| | ||
Sbjct 257 GAGAACAATTGATCCACGAGCATGGAGTTGATGAAGAAGGTGAAGATTACTCAGATAGTG 316
Query 242 ATAGTGGTGACTTGGCACAAACAAAGGTTCCTGATACGCAAGAAGAAGAAGAAGTGTATC 301
| |||||| || || ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 317 ACAGTGGTAACATGCCACAAACCGAGGTTCCTGAAACGCAAGAAGAAGAAGAAGTGTATC 376
Query 302 GTGTTACTATTGATGATGATGAAACGTTC-AAATATTCCGCT 342
||||||| |||||||||||||||| ||| ||| |||| |||
Sbjct 377 GTGTTACCATTGATGATGATGAAATATTCCAAA-ATTCTGCT 417
> AT3G42870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G30520.1);
Has 47 Blast hits to 47 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:14949456-14951279
FORWARD LENGTH=939
Length=939
Score = 414 bits (224), Expect = 8e-115
Identities = 346/403 (86%), Gaps = 16/403 (4%)
Strand=Plus/Plus
Query 360 AGATCTGGGA-GAAGCTCAAGAGTTTCTATTGGAAGTTGTTCACGAGGAAATCGTAGGCG 418
|||||| ||| |||||||| ||||||||||| ||||| |||||||||||| ||| | ||
Sbjct 253 AGATCT-GGAGGAAGCTCACGAGTTTCTATTAGAAGTGGTTCACGAGGAAGTCGAAAACG 311
Query 419 AAAAATCCTTTGAAACAACAATACAAGACACCATCGCTGGCTAT-AGAGAATTCCAAAGA 477
| |||| ||||||||||||||| |||||| ||| || ||| | |||||||||||| ||
Sbjct 312 -ACAATCATTTGAAACAACAATAGAAGACAATATCACTAGCT-TCAGAGAATTCCAACGA 369
Query 478 CAAAGTTTTCAACAACTTCGCCTTGGTGGTTTTGACCAAGATGATTACGATGAATTTAAA 537
||||||||| | | | || ||||| |||||||||||||||||||||||||||||||
Sbjct 370 CAAAGTTTT---C-A--T--CC-TGGTGCTTTTGACCAAGATGATTACGATGAATTTAAA 420
Query 538 AAGGCGGAAGCGATATTCATTGCACTAGACCTTCCCAAGCACACAAGATTTTATTGGGCA 597
||||||||||||||||| || ||||||| |||||||||||||| |||||||||||||||
Sbjct 421 AAGGCGGAAGCGATATTTATCCCACTAGATCTTCCCAAGCACACTAGATTTTATTGGGCA 480
Query 598 TGCATTAATGCACTTAAAGAACTAGTATTTTGGCGTAAATATTTCATTGACATATCTAG- 656
||||||||||||||| | || ||||||| ||||||||| ||||||||||| ||| || |
Sbjct 481 TGCATTAATGCACTTGAGGAGCTAGTATATTGGCGTAAGTATTTCATTGATATAGCT-GC 539
Query 657 AAGCAGTAACGAGGATAAGCTACAACTATTAGAAGCTATGACTGGTGTCTCACGAAAAAA 716
||||| ||||||||||| ||||||| |||||||||||||||||||| || | || ||
Sbjct 540 AAGCACCGACGAGGATAAGGTACAACTGTTAGAAGCTATGACTGGTGTTTCCCCCAACAA 599
Query 717 CCAAGATGTGCCAAAACAGTTAGGTCCATGCCATTCATTTGGG 759
||||||||||||||||||||||||| || | ||||||||||||
Sbjct 600 CCAAGATGTGCCAAAACAGTTAGGTTCAGGTCATTCATTTGGG 642
Score = 169 bits (91), Expect = 7e-41
Identities = 133/154 (86%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 963 ACAACAAGCTTCACCATCCGGTCTCGGTTTTACAAATTATTTTGAAACTGGACAAATACC 1022
||||||| | ||| |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 786 ACAACAAACATCATCATCCGGTGTCGGTTTCACAAATTATTTTGAAACTGGACAAATACC 845
Query 1023 ACAAACACCTAGACCGGGAGGTTTCTTCAACATTTGGGGAACCCCACAAGaaaaaaaTGC 1082
||||||||||||||| |||||| |||| || |||| ||||| || |||| | |||||
Sbjct 846 ACAAACACCTAGACCAGGAGGTCTCTTTAATATTTATGGAACTCCGCAAGGATCCAATGC 905
Query 1083 AAGTCATCAAAGTGATGTAGGAGATGAAGATTAG 1116
|| |||||| ||| |||||||||||||||| |||
Sbjct 906 AAATCATCACAGTAATGTAGGAGATGAAGAATAG 939
Score = 135 bits (73), Expect = 7e-31
Identities = 91/100 (91%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 226 GATGACTCAGACACTGATAGTGGTGACTTGGCACAAACAAAGGTTCCTGATACGCAAGAA 285
||| |||||||||||||||||||| || || ||||||| |||||||||| | |||||||
Sbjct 70 GATTACTCAGACACTGATAGTGGTAACATGCCACAAACCGAGGTTCCTGAAATGCAAGAA 129
Query 286 GAAGAAGAAGTGTATCGTGTTACTATTGATGATGATGAAA 325
||||||||||||||||||||||| ||||||||||||||||
Sbjct 130 GAAGAAGAAGTGTATCGTGTTACCATTGATGATGATGAAA 169
> AT3G30520.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G42870.1);
Has 70 Blast hits to 70 proteins in 9 species: Archae - 0;
Bacteria - 8; Metazoa - 5; Fungi - 0; Plants - 57; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:12130340-12132173
FORWARD LENGTH=1194
Length=1194
Score = 412 bits (223), Expect = 3e-114
Identities = 303/342 (89%), Gaps = 4/342 (1%)
Strand=Plus/Plus
Query 3 GGTTGATCCTGATACATGTATGATACATGCATCTGGCGCATGGTGGACACAACAAGAGTT 62
||||||||||||||||| | | ||| ||||||||| |||||||||||| ||||||||||
Sbjct 162 GGTTGATCCTGATACATCTTTCATAAATGCATCTGATGCATGGTGGACAGAACAAGAGTT 221
Query 63 TGGATGCAAATTAACAAAAAGCTTGAACCGAAAACCGCCTG-AGTTTTGGGACGTGATGC 121
|||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||
Sbjct 222 TGGATGCAAATTAACAAAAAACTTGAACCGAAAACCGCCTGTA-TTTTGGGACGTGATGC 280
Query 122 AACGATGTTTCGTATTACATGATGTTCAATCACAATCTGAACACTCTGCTCGTCAAAGAA 181
|||||||| ||||||||||||||||||||||||||||| |||| | |||| |||||||||
Sbjct 281 AACGATGTCTCGTATTACATGATGTTCAATCACAATCTCAACATTTTGCTTGTCAAAGAA 340
Query 182 GAGAACAATTAATACACGAGCATACAGTTGATGAAGAGGGCCATGATGACTCAGACACTG 241
|||||||||| || ||||||||| |||||||||||| || | ||| ||||||| | ||
Sbjct 341 GAGAACAATTGATCCACGAGCATGGAGTTGATGAAGAAGGTGAAGATTACTCAGATAGTG 400
Query 242 ATAGTGGTGACTTGGCACAAACAAAGGTTCCTGATACGCAAGAAGAAGAAGAAGTGTATC 301
| |||||| || || ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 401 ACAGTGGTAACATGCCACAAACCGAGGTTCCTGAAACGCAAGAAGAAGAAGAAGTGTATC 460
Query 302 GTGTTACTATTGATGATGATGAAACGTTC-AAATATTCCGCT 342
||||||| |||||||||||||||| ||| ||| |||| |||
Sbjct 461 GTGTTACCATTGATGATGATGAAATATTCCAAA-ATTCTGCT 501
Score = 355 bits (192), Expect = 5e-97
Identities = 279/320 (87%), Gaps = 9/320 (3%)
Strand=Plus/Plus
Query 360 AGATCTGGGA-GAAGCTCAAGAGTTTCTATTGGAAGTTGTTCACGAGGAAATCGTAGGCG 418
|||||| ||| ||| |||| ||||||||||||||||| ||||| |||||| ||| || ||
Sbjct 568 AGATCT-GGAGGAACCTCACGAGTTTCTATTGGAAGTGGTTCAGGAGGAAGTCGGAGACG 626
Query 419 AAAAATCCTTTGAAACAACAATACAAGACACCATCGCTGGCTAT-AGAGAATTCCAAAGA 477
| ||||||||||||||||||||||||||| |||| || ||| | ||||||||||| ||
Sbjct 627 -ACAATCCTTTGAAACAACAATACAAGACAGCATCACTAGCT-TCGGAGAATTCCAACGA 684
Query 478 CAAAGTTTTCAACAACTTCG-CCTTGGTGGTTTTGACCAAGATGATTACGATGAATTTAA 536
|||||||||||||||||||| || | ||| ||||||||||||||||||||||||||||||
Sbjct 685 CAAAGTTTTCAACAACTTCGTCC-TCGTGCTTTTGACCAAGATGATTACGATGAATTTAA 743
Query 537 AAAGGCGGAAGCGATATTCATTGCACTAGACCTTCCCAAGCACACAAGATTTTATTGGGC 596
|||||||||||||||||| | || ||||| |||||||||||||| |||||| |||||||
Sbjct 744 AAAGGCGGAAGCGATATTTACCGCCCTAGATCTTCCCAAGCACACTAGATTTCATTGGGC 803
Query 597 ATGCATTAATGCACTTAAAGAACTAGTATTTTGGCGTAAATATTTCATTGACATATCTAG 656
|||||||||||||||||| || ||||||||||||| ||| ||||||||||| ||| || |
Sbjct 804 ATGCATTAATGCACTTAAGGAGCTAGTATTTTGGCCTAAGTATTTCATTGATATAGCT-G 862
Query 657 -AAGCAGTAACGAGGATAAG 675
|||| | || ||||||||
Sbjct 863 CAAGCCCTGACAAGGATAAG 882
> AT2G07490.1 | Symbols: | transposable element gene | chr2:3120079-3121379
FORWARD LENGTH=1301
Length=1301
Score = 84.2 bits (45), Expect = 2e-15
Identities = 63/71 (89%), Gaps = 4/71 (6%)
Strand=Plus/Minus
Query 804 GGGTACACCACCAAATGCTCCACAATGGGGA-A-CACCACCAAATGCTCCTCAGTGGGGT 861
||||||||||||||||||||||||||||||| | | |||| ||||||||| || || ||
Sbjct 143 GGGTACACCACCAAATGCTCCACAATGGGGATAGC-CCAC-AAATGCTCCACAATGTAGT 86
Query 862 ACACCACCAAA 872
|||||||||||
Sbjct 85 ACACCACCAAA 75
> AT3G29773.1 | Symbols: | pseudogene, similar to OSJNBb0043H09.1,
blastp match of 34% identity and 6.6e-21 P-value to GP|21740634|emb|CAD40195.1||AL606611
OSJNBb0043H09.1 {Oryza sativa
(japonica cultivar-group)} | chr3:11627225-11630679 FORWARD
LENGTH=3455
Length=3455
Score = 82.4 bits (44), Expect = 9e-15
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 798 TTCTTGGGGTACACCACCAAATGCTCCACAATGGGGAACACCACCAAATGCTCCTCAGTG 857
||| |||||||||||||||||||||||||||||||| || ||||||| ||| || || ||
Sbjct 1412 TTCATGGGGTACACCACCAAATGCTCCACAATGGGGTACTCCACCAAGTGCACCACAATG 1471
Query 858 GGGTA 862
|||||
Sbjct 1472 GGGTA 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5