BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897013

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46820.1 | Symbols: PTAC8, TMP14, PSAP, PSI-P | photosystem ...  89.8    1e-17


> AT2G46820.1 | Symbols: PTAC8, TMP14, PSAP, PSI-P | photosystem 
I P subunit | chr2:19243589-19245141 FORWARD LENGTH=936
Length=936

 Score = 89.8 bits (48),  Expect = 1e-17
 Identities = 57/61 (93%), Gaps = 1/61 (2%)
 Strand=Plus/Plus

Query  265  CAGGGAGGC-TTGTTTCAAAAGGTCAAGAACACATACAAAGACATATTAGGGAGCAGCTG  323
            ||||||||| |||||| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct  605  CAGGGAGGCTTTGTTTGAGAAGGTCAAGAGCACATACAAAGACATATTAGGGAGCAGCTG  664

Query  324  A  324
            |
Sbjct  665  A  665


 Score = 78.7 bits (42),  Expect = 3e-14
 Identities = 42/42 (100%), Gaps = 0/42 (0%)
 Strand=Plus/Plus

Query  171  AGGATGGTTCACTTACAAGAACCTGGTCTTCAAACCAGACAG  212
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  566  AGGATGGTTCACTTACAAGAACCTGGTCTTCAAACCAGACAG  607



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5