BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897017

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G40083.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   191    6e-48
  AT2G06285.1 | Symbols:  | transposable element gene | chr2:2474...   106    2e-22


> AT1G40083.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 24 Blast hits 
to 19 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:14922423-14923055 REVERSE 
LENGTH=522
Length=522

 Score =  191 bits (103),  Expect = 6e-48
 Identities = 274/352 (78%), Gaps = 29/352 (8%)
 Strand=Plus/Plus

Query  151  ATGCCTGCAGGCCTTCTTGCGAAAA-TAGTTAGCTATATAGGTGAAGAAG-GA-ATTGGT  207
            ||||||||| || ||||||| |||| | ||||||||||||| |||||  | || ||||||
Sbjct  1    ATGCCTGCATGCATTCTTGCAAAAACT-GTTAGCTATATAGCTGAAG--GTGAGATTGGT  57

Query  208  GAGTTAAAGAATTGGATTGTCTCCGGGAGGGAAGGAATGGAAGCTGTATTGTCACCGGAG  267
            |||||||||||||||||| | ||| ||||||| ||||||| ||| ||||| ||||| || 
Sbjct  58   GAGTTAAAGAATTGGATTTTATCCTGGAGGGAGGGAATGGTAGCAGTATTTTCACCTGAC  117

Query  268  TGTCTGACTTCTGTAAG---A-------------TA--TTCTGACATTGAAGATGCAATA  309
            ||| |||  || |||||   |             ||  || |||||| ||||| ||||| 
Sbjct  118  TGTGTGAAATCGGTAAGCCTAGTGTCGGCTTTCCTATTTTTTGACATAGAAGAGGCAATT  177

Query  310  AAGGTCGTCGCAACA-G-TAAAAAGAGTCTACCCGGTGGCCGAATTGTTATATATTATGT  367
             || ||| ||| | | | |||||| ||||||||| |||||| |||| ||||| |||||||
Sbjct  178  GAGCTCGCCGC-ATATGCTAAAAA-AGTCTACCCTGTGGCCAAATTATTATACATTATGT  235

Query  368  TGAACAGCTGCGCTGGAAAGGAAGACCGGGTAGTGTACTCGAAATTTAAAAAGAGATACA  427
            |||| || |  | |||||| || ||||  | ||| |||||||||||||||||||||||||
Sbjct  236  TGAAGAGTTTAGGTGGAAAAGAGGACCACGAAGTTTACTCGAAATTTAAAAAGAGATACA  295

Query  428  ATTACGAAGAAGCTGAGCAATTGTGTGGTACATTGAGGTTCCATATAA-AAT  478
            ||||||||||||| |||  ||| ||||  || |||| |||||| |||| |||
Sbjct  296  ATTACGAAGAAGCAGAGGGATTTTGTGAAACGTTGAAGTTCCACATAAGAAT  347


> AT2G06285.1 | Symbols:  | transposable element gene | chr2:2474012-2474764 
FORWARD LENGTH=753
Length=753

 Score =  106 bits (57),  Expect = 2e-22
 Identities = 92/108 (85%), Gaps = 6/108 (6%)
 Strand=Plus/Plus

Query  291  TGACATT-GAAGATGCAATAAAGGTCGTCGCAACAG-TAAAAAGAGTCTACCCGGTGGCC  348
            |||| || ||||| ||||||| |||||||||| | | |||| | ||||||||| || || 
Sbjct  460  TGAC-TTGGAAGAGGCAATAATGGTCGTCGCAGCTGCTAAAGA-AGTCTACCCAGTCGCA  517

Query  349  GAATTGTTATATATTATGTTGAACAGCTGCGCTGGAA-AGGAAGACCG  395
            ||||| ||||||||||||||||||||||||||||||| || | |||||
Sbjct  518  GAATTATTATATATTATGTTGAACAGCTGCGCTGGAACAG-AGGACCG  564



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22856536885


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5