BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg897019 Length=1902 Score E Sequences producing significant alignments: (Bits) Value AT1G36970.1 | Symbols: | Domain of unknown function (DUF1985) ... 265 1e-69 AT3G32275.1 | Symbols: | transposable element gene | chr3:1323... 165 1e-39 AT1G40103.1 | Symbols: | transposable element gene | chr1:1507... 135 1e-30 > AT1G36970.1 | Symbols: | Domain of unknown function (DUF1985) | chr1:14016385-14018356 REVERSE LENGTH=1320 Length=1320 Score = 265 bits (143), Expect = 1e-69 Identities = 275/337 (82%), Gaps = 16/337 (5%) Strand=Plus/Plus Query 593 ATGATGATGAGGCAGATGATATAAAACTGTGGGTGAATTCGCAGTTGGATGCTATAAGAC 652 |||||||||| ||||| ||||||||| ||||||||||||||| |||| | || ||| || Sbjct 449 ATGATGATGAAGCAGAAGATATAAAATTGTGGGTGAATTCGCTGTTGTCTTCTGTAAAAC 508 Query 653 GTGAATTTGCGGAGAGTGTTAAGAAGTTAAGAGCTCAGAATGTGAATCTTCTGAAAAAGA 712 ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| Sbjct 509 ATGAATTTGCGGAGAGTGTTAAGAAGTTAAGATCTCAGAATCTAAATCTTCTGAAAAAGA 568 Query 713 TCAAGGCCCTGACATCTCTGAAGAT-GCCAAAATTTCAATATCACAA-ATTCTCTC-GCT 769 |||||||| ||| |||| | || || ||| ||||||| || ||||| || ||| | | | Sbjct 569 TCAAGGCCTTGAAATCTGTCAA-ATTGCCCAAATTTCGTTACCACAAGAT-CTC-CAGGT 625 Query 770 CTAGACAGTCATCTTGTCCTCCATCCA-GAAAAATACATAAAGCAGGTAAACACC-C-CA 826 | ||||||||| || ||||||||| | |||| ||| |||| ||| |||| | || Sbjct 626 CCAGACAGTCAACTAGTCCTCCATTTAAGAAAG-TACGCCTAGCACTTAACCACCACACA 684 Query 827 TTCTGTCTGAATCTCCTGTGAAGGCTGCTGTAGATGCTCAAAACATC-CGAACTCCCCCT 885 | | ||||||||||||||| || ||| |||| || ||| ||||||| | |||||||||| Sbjct 685 T-C-GTCTGAATCTCCTGTCAACCCTGTTGTATATTCTCCAAACATCAC-AACTCCCCCT 741 Query 886 TCA-AGTCCATTAACTTCAATGCATGAGGAAGACAAT 921 ||| | |||||||||||| |||| |||| ||||||| Sbjct 742 TCAGAA-CCATTAACTTCATTGCACGAGGGAGACAAT 777 > AT3G32275.1 | Symbols: | transposable element gene | chr3:13231439-13233121 FORWARD LENGTH=1683 Length=1683 Score = 165 bits (89), Expect = 1e-39 Identities = 117/131 (89%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 593 ATGATGATGAGGCAGATGATATAAAACTGTGGGTGAATTCGCAGTTGGATGCTATAAGAC 652 |||||||||| ||||| || |||||| |||||||||| ||||||||| | | ||||||| Sbjct 1465 ATGATGATGAAGCAGAAGACATAAAATTGTGGGTGAAGTCGCAGTTGTCTTCCATAAGAC 1524 Query 653 GTGAATTTGCGGAGAGTGTTAAGAAGTTAAGAGCTCAGAATGTGAATCTTCTGAAAAAGA 712 ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| Sbjct 1525 ATGAATTTGCGGAGAGTGTTAAGAAGTTAAGATCTCAGAATTTAAATCTTCTGAAAAAGA 1584 Query 713 TCAAGGCCCTG 723 |||||| |||| Sbjct 1585 TCAAGGTCCTG 1595 > AT1G40103.1 | Symbols: | transposable element gene | chr1:15078534-15081356 REVERSE LENGTH=2823 Length=2823 Score = 135 bits (73), Expect = 1e-30 Identities = 110/128 (86%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 597 TGATGAGGCAGATGATATAAAACTGTGGGTGAATTCGCAGTTGGATGCTATAAGACGTGA 656 |||||| ||||| || || ||| |||||||||| || |||||| | ||||||||| ||| Sbjct 1535 TGATGAAGCAGAAGACATTAAATTGTGGGTGAAGTCTCAGTTGTCTTCTATAAGACATGA 1594 Query 657 ATTTGCGGAGAGTGTTAAGAAGTTAAGAGCTCAGAATGTGAATCTTCTGAAAAAGATCAA 716 |||||||||||||||||||||||||||| |||||||| | ||||| |||||||| |||| Sbjct 1595 ATTTGCGGAGAGTGTTAAGAAGTTAAGATCTCAGAATCTAAATCTCCTGAAAAATATCA- 1653 Query 717 GGC-CCTG 723 ||| |||| Sbjct 1654 GGCTCCTG 1661 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94176222420 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5