BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897019
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36970.1 | Symbols: | Domain of unknown function (DUF1985) ... 265 1e-69
AT3G32275.1 | Symbols: | transposable element gene | chr3:1323... 165 1e-39
AT1G40103.1 | Symbols: | transposable element gene | chr1:1507... 135 1e-30
> AT1G36970.1 | Symbols: | Domain of unknown function (DUF1985)
| chr1:14016385-14018356 REVERSE LENGTH=1320
Length=1320
Score = 265 bits (143), Expect = 1e-69
Identities = 275/337 (82%), Gaps = 16/337 (5%)
Strand=Plus/Plus
Query 593 ATGATGATGAGGCAGATGATATAAAACTGTGGGTGAATTCGCAGTTGGATGCTATAAGAC 652
|||||||||| ||||| ||||||||| ||||||||||||||| |||| | || ||| ||
Sbjct 449 ATGATGATGAAGCAGAAGATATAAAATTGTGGGTGAATTCGCTGTTGTCTTCTGTAAAAC 508
Query 653 GTGAATTTGCGGAGAGTGTTAAGAAGTTAAGAGCTCAGAATGTGAATCTTCTGAAAAAGA 712
||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||
Sbjct 509 ATGAATTTGCGGAGAGTGTTAAGAAGTTAAGATCTCAGAATCTAAATCTTCTGAAAAAGA 568
Query 713 TCAAGGCCCTGACATCTCTGAAGAT-GCCAAAATTTCAATATCACAA-ATTCTCTC-GCT 769
|||||||| ||| |||| | || || ||| ||||||| || ||||| || ||| | | |
Sbjct 569 TCAAGGCCTTGAAATCTGTCAA-ATTGCCCAAATTTCGTTACCACAAGAT-CTC-CAGGT 625
Query 770 CTAGACAGTCATCTTGTCCTCCATCCA-GAAAAATACATAAAGCAGGTAAACACC-C-CA 826
| ||||||||| || ||||||||| | |||| ||| |||| ||| |||| | ||
Sbjct 626 CCAGACAGTCAACTAGTCCTCCATTTAAGAAAG-TACGCCTAGCACTTAACCACCACACA 684
Query 827 TTCTGTCTGAATCTCCTGTGAAGGCTGCTGTAGATGCTCAAAACATC-CGAACTCCCCCT 885
| | ||||||||||||||| || ||| |||| || ||| ||||||| | ||||||||||
Sbjct 685 T-C-GTCTGAATCTCCTGTCAACCCTGTTGTATATTCTCCAAACATCAC-AACTCCCCCT 741
Query 886 TCA-AGTCCATTAACTTCAATGCATGAGGAAGACAAT 921
||| | |||||||||||| |||| |||| |||||||
Sbjct 742 TCAGAA-CCATTAACTTCATTGCACGAGGGAGACAAT 777
> AT3G32275.1 | Symbols: | transposable element gene | chr3:13231439-13233121
FORWARD LENGTH=1683
Length=1683
Score = 165 bits (89), Expect = 1e-39
Identities = 117/131 (89%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 593 ATGATGATGAGGCAGATGATATAAAACTGTGGGTGAATTCGCAGTTGGATGCTATAAGAC 652
|||||||||| ||||| || |||||| |||||||||| ||||||||| | | |||||||
Sbjct 1465 ATGATGATGAAGCAGAAGACATAAAATTGTGGGTGAAGTCGCAGTTGTCTTCCATAAGAC 1524
Query 653 GTGAATTTGCGGAGAGTGTTAAGAAGTTAAGAGCTCAGAATGTGAATCTTCTGAAAAAGA 712
||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||
Sbjct 1525 ATGAATTTGCGGAGAGTGTTAAGAAGTTAAGATCTCAGAATTTAAATCTTCTGAAAAAGA 1584
Query 713 TCAAGGCCCTG 723
|||||| ||||
Sbjct 1585 TCAAGGTCCTG 1595
> AT1G40103.1 | Symbols: | transposable element gene | chr1:15078534-15081356
REVERSE LENGTH=2823
Length=2823
Score = 135 bits (73), Expect = 1e-30
Identities = 110/128 (86%), Gaps = 2/128 (2%)
Strand=Plus/Plus
Query 597 TGATGAGGCAGATGATATAAAACTGTGGGTGAATTCGCAGTTGGATGCTATAAGACGTGA 656
|||||| ||||| || || ||| |||||||||| || |||||| | ||||||||| |||
Sbjct 1535 TGATGAAGCAGAAGACATTAAATTGTGGGTGAAGTCTCAGTTGTCTTCTATAAGACATGA 1594
Query 657 ATTTGCGGAGAGTGTTAAGAAGTTAAGAGCTCAGAATGTGAATCTTCTGAAAAAGATCAA 716
|||||||||||||||||||||||||||| |||||||| | ||||| |||||||| ||||
Sbjct 1595 ATTTGCGGAGAGTGTTAAGAAGTTAAGATCTCAGAATCTAAATCTCCTGAAAAATATCA- 1653
Query 717 GGC-CCTG 723
||| ||||
Sbjct 1654 GGCTCCTG 1661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94176222420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5