BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897043

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G42724.1 | Symbols:  | pseudogene, F-box protein, similar to...   250    9e-66
  AT3G42770.1 | Symbols:  | F-box/RNI-like/FBD-like domains-conta...   171    7e-42
  AT3G44090.1 | Symbols:  | F-box family protein | chr3:15839123-...   167    1e-40
  AT3G44096.1 | Symbols:  | transposable element gene | chr3:1585...   152    3e-36


> AT3G42724.1 | Symbols:  | pseudogene, F-box protein, similar 
to F-box protein | chr3:14841392-14842638 FORWARD LENGTH=1247
Length=1247

 Score =  250 bits (135),  Expect = 9e-66
 Identities = 189/214 (88%), Gaps = 8/214 (4%)
 Strand=Plus/Plus

Query  257  TTGTGGACCTCTACTACTCTGATTATGCTCGGCCTCATCAGTCTCTACATTGTAATTTGG  316
            |||| |||||| |||||||||||||| ||| | | |    |||||| |||||||||||||
Sbjct  347  TTGTCGACCTCCACTACTCTGATTATACTCTG-C-C-GGGGTCTCTGCATTGTAATTTGG  403

Query  317  ATTTACTTGCCAAAGCTACACTTGACCTTACTTTCGCaaaaaaaTCAGAT-GG--GCTGG  373
            ||| ||||||||||| |||||| ||| |||||||||||||||||||| || ||  |||||
Sbjct  404  ATTCACTTGCCAAAGTTACACTGGACATTACTTTCGCAAAAAAATCAAATGGGCTGCTGG  463

Query  374  TTTACGAGGATGTGAGGGATCGCATCAGCGGGATACGCAACGTCAAGACCCTGCACTTGA  433
            |||||| ||||||  || ||| |||||||||||||||||||||||||||||||||| |||
Sbjct  464  TTTACGGGGATGT--GGAATCTCATCAGCGGGATACGCAACGTCAAGACCCTGCACCTGA  521

Query  434  CTTCTTCTGCTGTCGAGGTCAGTTTTAGTGTATG  467
            ||||||||||||||||||||||||||||||||||
Sbjct  522  CTTCTTCTGCTGTCGAGGTCAGTTTTAGTGTATG  555


> AT3G42770.1 | Symbols:  | F-box/RNI-like/FBD-like domains-containing 
protein | chr3:14867122-14870083 FORWARD LENGTH=1599
Length=1599

 Score =  171 bits (92),  Expect = 7e-42
 Identities = 168/202 (83%), Gaps = 15/202 (7%)
 Strand=Plus/Plus

Query  17   ATCTCCCATCCAAAATCTTCACCAGCACAAAACTCGTTAAGCTGTCATTGGGAAGAGAAT  76
            ||||||||||| |||||||||||||||| ||| | |||||||||||||||| || | || 
Sbjct  380  ATCTCCCATCCGAAATCTTCACCAGCACGAAATTGGTTAAGCTGTCATTGGTAACACAA-  438

Query  77   A-TTGCTTCTCAAGTT-TTCCT--TTGGATATATCTCTCCC-TGCACTAAAGGTTCTCTT  131
            | ||||||| | |||| | |||  || | |||||||||||| | ||||||||||||||||
Sbjct  439  AGTTGCTTC-CCAGTTGTACCTAATT-G-TATATCTCTCCCAT-CACTAAAGGTTCTCTT  494

Query  132  CCTTGATTCAATCTGGTTT-AAGGACAATCAACTATCGAATGTGTTTCTCGCTGCTTGCC  190
            |||||||||||| |||||| |||  |  |||| | |  ||| | || ||| |||||||||
Sbjct  495  CCTTGATTCAATTTGGTTTGAAGTTCC-TCAATTCTT-AATAT-TT-CTCACTGCTTGCC  550

Query  191  CTGCACTTGAGGACTTAACCAT  212
            |||||||||| |||||||||||
Sbjct  551  CTGCACTTGAAGACTTAACCAT  572


> AT3G44090.1 | Symbols:  | F-box family protein | chr3:15839123-15840759 
FORWARD LENGTH=1350
Length=1350

 Score =  167 bits (90),  Expect = 1e-40
 Identities = 170/207 (82%), Gaps = 11/207 (5%)
 Strand=Plus/Plus

Query  16   GATCTCCCATCCAAAATCTTCACCAGCACAAAACTCGTTAAGCTGTCATTGGGAAGA-GA  74
            ||| |||||| |||| ||||||||||||| ||||| ||||||||||||||||||| | ||
Sbjct  434  GAT-TCCCATACAAAGTCTTCACCAGCACCAAACTGGTTAAGCTGTCATTGGGAACACGA  492

Query  75   ATATTG-CTTCTCAAGTTTTCCTTTGGATATATCTCTCCCTG-CACTAAAGGTTCTCTTC  132
             ||  | || | ||||  |||||   |||| ||||||||| | | ||||| || ||| | 
Sbjct  493  CTA--GCCTGCCCAAGAATTCCTCAAGATACATCTCTCCCGGTC-CTAAAAGTCCTCCTA  549

Query  133  CTTGATTCA-ATCTGGTTTAAGGACAATCAACTATC-GAATGTGTTTCTCGCTGCTTGCC  190
            ||||| | | || |||||| |||| |||||| |||| | ||||||||||||| |||||||
Sbjct  550  CTTGAAT-ATATATGGTTTGAGGATAATCAATTATCTG-ATGTGTTTCTCGCAGCTTGCC  607

Query  191  CTGCACTTGAGGACTTAACCATCCATC  217
            |||||||||||||||||||||| ||||
Sbjct  608  CTGCACTTGAGGACTTAACCATACATC  634


> AT3G44096.1 | Symbols:  | transposable element gene | chr3:15859368-15863166 
REVERSE LENGTH=3799
Length=3799

 Score =  152 bits (82),  Expect = 3e-36
 Identities = 162/199 (81%), Gaps = 12/199 (6%)
 Strand=Plus/Plus

Query  20   TCCCATCCAAAATCTTCACCAGCACAAAACTCGTTAAGCTGTCATT-GGGAAGAGA-ATA  77
            |||||||| || | ||||||||||||| ||| |||||||||||||| ||||| | |   |
Sbjct  257  TCCCATCCCAAGTATTCACCAGCACAACACTGGTTAAGCTGTCATTGGGGAA-A-ACCCA  314

Query  78   TTGCTTCTCA--AGTTTTCCT-TTGGATATATCTCTCCCTGCACTAAAGGTTCTCTTCCT  134
               | ||| |  |||||| ||  | |||| ||||||||| | ||||||||||||| ||||
Sbjct  315  ACACATCT-ATGAGTTTT-CTCCT-GATACATCTCTCCCAGTACTAAAGGTTCTCCTCCT  371

Query  135  TGATTCAATCTGGTTTAAGGACA-ATCAACTATCGAATGTGTTTCTCGCTGCTTGCCCTG  193
            |||||| |||||||||  ||| | ||| | || | ||||| ||| |||||||||||||||
Sbjct  372  TGATTCTATCTGGTTT-TGGAAATATCCATTAGCAAATGTATTTTTCGCTGCTTGCCCTG  430

Query  194  CACTTGAGGACTTAACCAT  212
            |||||||||||||||||||
Sbjct  431  CACTTGAGGACTTAACCAT  449



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5