BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897044
Length=276
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42724.1 | Symbols: | pseudogene, F-box protein, similar to... 209 9e-54
> AT3G42724.1 | Symbols: | pseudogene, F-box protein, similar
to F-box protein | chr3:14841392-14842638 FORWARD LENGTH=1247
Length=1247
Score = 209 bits (113), Expect = 9e-54
Identities = 137/149 (92%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 1 ATGGATGACCCAAAAAAGGTGCAACTCACAAAGGATCTGTTGGAGCTTGCCACCGCTTCA 60
||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1014 ATGGATGACCCCCAAAAGGTGCAACTCACAAAGGATCTATTGGAACTTGCCACCGCTTCA 1073
Query 61 CCCAAGCTCAAGATATTGAAGGATCTGTTGAAGCTTGCCACGGCTACACCGAAGATCAAG 120
||||||||||||||||||||| ||||||||||||||||||| ||| |||| ||| |||||
Sbjct 1074 CCCAAGCTCAAGATATTGAAGAATCTGTTGAAGCTTGCCACCGCTTCACCCAAGCTCAAG 1133
Query 121 ATAATGAAGGATCTGTTGAAGCTTGCCAC 149
||| ||||| | |||||||||||||||||
Sbjct 1134 ATATTGAAGAACCTGTTGAAGCTTGCCAC 1162
Score = 119 bits (64), Expect = 2e-26
Identities = 87/98 (89%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 31 AAGGATCTGTTGGAGCTTGCCACCGCTTCACCCAAGCTCAAGATATTGAAGGATCTGTTG 90
||| |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1092 AAGAATCTGTTGAAGCTTGCCACCGCTTCACCCAAGCTCAAGATATTGAAGAACCTGTTG 1151
Query 91 AAGCTTGCCACGGC-TACACCGAAGATCAAGATAATGA 127
||||||||||| | | |||| ||| |||||||| |||
Sbjct 1152 AAGCTTGCCACCACCT-CACCCAAGGTCAAGATATTGA 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12667472748
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5