BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897047
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42770.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 309 3e-83
> AT3G42770.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr3:14867122-14870083 FORWARD LENGTH=1599
Length=1599
Score = 309 bits (167), Expect = 3e-83
Identities = 469/605 (78%), Gaps = 59/605 (10%)
Strand=Plus/Plus
Query 106 TGGATATGTAGTTCTC-TGAAACGTGGCGTCTCTGAGCTTCATCT-AGCCATAGAATCTA 163
|||||||||| | | | || ||| || ||||||||||||||||| || ||||| | ||
Sbjct 310 TGGATATGTAATGCCCTTG-AACACGGTGTCTCTGAGCTTCATCTAAG-GATAGACTATA 367
Query 164 TGTGGCTGTTTGC-TATCCCATCC-AAAGTCTTCACCAGCAC-AACACTCGTTAAGCTGT 220
| || || | | | |||||||| ||| ||||||||||||| || | | ||||||||||
Sbjct 368 CGAAGCGGTGT-CATCTCCCATCCGAAA-TCTTCACCAGCACGAA-ATTGGTTAAGCTGT 424
Query 221 CATTGGGAACACGTTTTTGCTT-CCAGAGTGTTCCT--TCGGATACATATCTTCCAGCAC 277
|||||| ||||| |||||| |||| ||| ||| | | || || ||| ||| |||
Sbjct 425 CATTGGTAACACAAAGTTGCTTCCCAG-TTGTACCTAAT-TG-TATATCTCTCCCATCAC 481
Query 278 TAAAGGTTCTCTTCCTTGATTCAATTTGGTTTGACTTTCATCAATTCGCTAATGTGTTTC 337
|||||||||||||||||||||||||||||||||| ||| ||||||| |||| | || |
Sbjct 482 TAAAGGTTCTCTTCCTTGATTCAATTTGGTTTGAAGTTCCTCAATTCT-TAATAT-TT-C 538
Query 338 TCCCTCCTTGCCCT-CTACTTGAGGACCTTGAC-ATACATATCAA--GTCTCATTCAAG- 392
|| || |||||||| | |||||| ||| || || ||| |||||| | ||||||| |
Sbjct 539 TCACTGCTTGCCCTGC-ACTTGAAGAC-TTAACCATA--TATCAAAAGCCTCATTCT-GT 593
Query 393 AGGAAAGCCAGT-C-ATTATATCCAGCAAAACCATTAAGAGACTCT-TATTTACCTATAA 449
||||| |||| | | || ||||| |||||||||||||||||||||| | || |||||||
Sbjct 594 AGGAATGCCA-TACCAT-ATATCTAGCAAAACCATTAAGAGACTCTCTGTT-ACCTATA- 649
Query 450 CCATG-G-TTATTATGAC-ATTAT----TTCACTTA---A-CACACCAAATGTTGTCGAC 498
| ||| | ||||| || ||||| || | ||| | |||||| | ||||||||||
Sbjct 650 C-ATGTGGTTATTTTGTTGATTATGGCCTTAAATTATTTAACACACCGAGTGTTGTCGAC 708
Query 499 CTCTACTACTGT-AGTTATGCTAGGCATGAGTCTCTTCAT-TGTAATCTGGGTTCACTTG 556
|||||||||| | | ||||| | | ||| ||| || ||| || ||| ||| |||||||
Sbjct 709 CTCTACTACTCTGA-TTATGTTCGACATAAGTATCCACATATG-AATTTGGATTCACTTC 766
Query 557 -TCAAAGCTACACTAGACCTTCAAATCTTAGAACATGATGAGGACGCGGATGTGAC-GAA 614
| ||||||||||| ||| |||| ||||||| |||| | | ||| | ||||| ||
Sbjct 767 CT-AAAGCTACACTGGACATTCATTTCTTAGA---TGATAATGCCGCTAACGTGACAGAG 822
Query 615 TCTCCTCAGTGGGATAAGCAATGTCAAGACCCTTCACTTGACTTCTTCTGCTGTCAAGGT 674
||||||||||||||| |||| |||||||||||||||||||||||||| |||| |||||
Sbjct 823 -CTCCTCAGTGGGATACGCAACGTCAAGACCCTTCACTTGACTTCTTCCACTGTTAAGGT 881
Query 675 GATTT 679
|||||
Sbjct 882 GATTT 886
Score = 191 bits (103), Expect = 1e-47
Identities = 138/154 (90%), Gaps = 6/154 (4%)
Strand=Plus/Plus
Query 249 TGTTCCTTCGGATACATATCTTCCAGCACTAAAGGTTCTCTTCCTTGATTCAATTTGGTT 308
|||||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||
Sbjct 1275 TGTTCCTTCGGATACATATCTTCCAGCACTTAAGGTTCTCTTCCTTGACTCAGTGTGGTT 1334
Query 309 TGACTTTCATCAATTCGCTAATGTGTTTCTCCCTCCTTGCCCT-CTACTTGAGGACCTTG 367
|||||||||||||||||||||||| ||| ||||| |||| ||| | |||||||||| |||
Sbjct 1335 TGACTTTCATCAATTCGCTAATGTTTTTTTCCCTGCTTGTCCTGC-ACTTGAGGACTTTG 1393
Query 368 ACA-TACATATCAAGTCTCATTCAAGAGGAAAGC 400
|| ||||||||||||| ||||| |||||||||
Sbjct 1394 -CAATACATATCAAGTC--ATTCAGGAGGAAAGC 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5