BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897054

Length=948
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G00960.1 | Symbols:  | Protein kinase superfamily protein | ...   237    1e-61
  AT4G00970.1 | Symbols: CRK41 | cysteine-rich RLK (RECEPTOR-like...   220    2e-56
  AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-...   113    3e-24


> AT4G00960.1 | Symbols:  | Protein kinase superfamily protein 
| chr4:414361-416180 FORWARD LENGTH=1119
Length=1119

 Score =  237 bits (128),  Expect = 1e-61
 Identities = 161/176 (91%), Gaps = 6/176 (3%)
 Strand=Plus/Plus

Query  765  CTTGATTCTGGGGAAGAG--AGCTGTGAAAAGATTGTCAATGAAATCAGGACAAGGAGAC  822
            |||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CTTGATTCCGGGGAAGAGATAGCTGTGAAAAGATTGTCAATGAAATCAGGACAAGGAGAC  282

Query  823  AATGAGTTCGTAAACGAAGTCTCGTGGGTTGAGAAACTTCAACATCATAATCTTGTGAGG  882
            ||||||||||||||||||||||| | ||||| |||||||||||||| ||||||||| |||
Sbjct  283  AATGAGTTCGTAAACGAAGTCTCATTGGTTGCGAAACTTCAACATCGTAATCTTGTTAGG  342

Query  883  CTTTTAGGTTTTTACTT-AAGAGGGAGAAGAACGACTTCATCATCTATGAGTTCTT  937
            ||||||||||| |  || || ||| |||||||||||||| ||||||||||||||||
Sbjct  343  CTTTTAGGTTTCTGTTTTAA-AGG-AGAAGAACGACTTC-TCATCTATGAGTTCTT  395


> AT4G00970.1 | Symbols: CRK41 | cysteine-rich RLK (RECEPTOR-like 
protein kinase) 41 | chr4:418437-421694 FORWARD LENGTH=1998
Length=1998

 Score =  220 bits (119),  Expect = 2e-56
 Identities = 167/189 (88%), Gaps = 8/189 (4%)
 Strand=Plus/Plus

Query  759   GGTATTCTTGATTCTGGGGAAGAG--AGCTGTGAAAAGATTGTCAATGAAATCAGGACAA  816
             ||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct  1081  GGTGTTCTTGATTATGGGGAAGAGATAGCTGTGAAAAGATTGTCAATGAAATCAGGACAA  1140

Query  817   GGAGACAATGAGTTCGTAAACGAAGTCTCGTGGGTTG-AGAAACTTCAACATCATAATCT  875
             ||||||||||||||| ||||||||||||| | ||||| | ||||| ||||||| ||| ||
Sbjct  1141  GGAGACAATGAGTTCATAAACGAAGTCTCATTGGTTGCA-AAACTCCAACATCGTAACCT  1199

Query  876   TGTGAGGCTTTTAGGTTTTTACTTA-AGAGGGAGAAGAACGACTTCATCATCTATGAGTT  934
             ||| ||||| |||||||| | |||| | ||| |||||||||| ||| |||||||||||||
Sbjct  1200  TGTTAGGCTCTTAGGTTTCTGCTTACA-AGG-AGAAGAACGAATTC-TCATCTATGAGTT  1256

Query  935   CTTCAGGAA  943
             ||||| |||
Sbjct  1257  CTTCAAGAA  1265


> AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-21251100 
REVERSE LENGTH=3479
Length=3479

 Score =  113 bits (61),  Expect = 3e-24
 Identities = 92/107 (86%), Gaps = 1/107 (1%)
 Strand=Plus/Plus

Query  43    ATCTGCATTCAATTGTACACCATCATCAAAATCACCTCCATGAAGACCAGAATAAACAAG  102
             ||| |||||||||| | ||||||||||||| ||||||||  ||||| ||| ||  |||||
Sbjct  2603  ATCCGCATTCAATTCTTCACCATCATCAAAGTCACCTCCCCGAAGATCAGGATTGACAAG  2662

Query  103   TCAGGCGTCACAAAGAGCAGCAGCAGTGGCTGCCCTCTCGCAA-TTC  148
              |||||||||||||||||||||||||||||||| || || ||| |||
Sbjct  2663  CCAGGCGTCACAAAGAGCAGCAGCAGTGGCTGCTCTTTCCCAAGTTC  2709



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46366117681


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5