BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897059

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02800.1 | Symbols:  | Protein kinase superfamily protein | ...   169    2e-41
  AT3G07930.3 | Symbols:  | DNA glycosylase superfamily protein |...   159    1e-38
  AT3G06530.2 | Symbols:  | ARM repeat superfamily protein | chr3...   148    3e-35


> AT5G02800.1 | Symbols:  | Protein kinase superfamily protein 
| chr5:635228-637503 REVERSE LENGTH=1583
Length=1583

 Score =  169 bits (91),  Expect = 2e-41
 Identities = 103/109 (94%), Gaps = 0/109 (0%)
 Strand=Plus/Plus

Query  1    ATGGGTTGGATCCCGTGTTCTGGGAAATCGAGCGGGAGGACTAAGACAAGGAGGAACGCT  60
            |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct  130  ATGGGTTGGATCCCGTGTTCTGGGAAATCGAGTGGGAGGAATAAGACAAGGAGGAACGGT  189

Query  61   GACCAAAAACTCAACAGGAAGTCTTCTGATTGTTCTGTCTCTACTTCAG  109
            ||||| |||||| ||||||||||||||||||||||||| ||||||||||
Sbjct  190  GACCACAAACTCGACAGGAAGTCTTCTGATTGTTCTGTGTCTACTTCAG  238


> AT3G07930.3 | Symbols:  | DNA glycosylase superfamily protein 
| chr3:2526630-2528633 FORWARD LENGTH=1645
Length=1645

 Score =  159 bits (86),  Expect = 1e-38
 Identities = 121/137 (88%), Gaps = 5/137 (4%)
 Strand=Plus/Plus

Query  185  AAAGTGGAAAG-AATTATAGGAGAGGAAGCAGCAAACGTCAAGCTAAAGTCCGAAGAGTT  243
            ||||||| ||| |||||| ||| |||||||||||||||||||| ||||||| ||||||||
Sbjct  713  AAAGTGG-AAGAAATTATCGGAAAGGAAGCAGCAAACGTCAAGTTAAAGTCAGAAGAGTT  771

Query  244  TCGCCATATTTCCAGGAATCAACTGTTTCAAAACAGCCAAGCCAGGCTCCTCCTAGAGAT  303
            |||||||||||||||||||||||||||||| ||||||||| ||| ||||||   || | |
Sbjct  772  TCGCCATATTTCCAGGAATCAACTGTTTCAGAACAGCCAAACCAAGCTCCTAA-AG-G-T  828

Query  304  TTGCGTCAGTATTTTAA  320
            |||||| | ||||||||
Sbjct  829  TTGCGTAACTATTTTAA  845


> AT3G06530.2 | Symbols:  | ARM repeat superfamily protein | chr3:2022433-2033791 
FORWARD LENGTH=6917
Length=6917

 Score =  148 bits (80),  Expect = 3e-35
 Identities = 88/92 (96%), Gaps = 0/92 (0%)
 Strand=Plus/Plus

Query  317   TTAAAATTGTTGTCTCAAGCTTCTGTAATCAAGCAGACTCTACTGAGAAAGTTACCTCTG  376
             ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  1896  TTAAAATTGCTGTCTCAAGCTTCGGTAATCAAACAGACTCTACTGAGAAAGTTACCTCTG  1955

Query  377   CAATGTTCCCATTTCTCTTAATTCAACCGAAG  408
             ||||||||||||||||||||||||| ||||||
Sbjct  1956  CAATGTTCCCATTTCTCTTAATTCAGCCGAAG  1987



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5