BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897094
Length=231
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43505.1 | Symbols: LCR30 | low-molecular-weight cysteine-ri... 307 3e-83
AT3G61175.1 | Symbols: LCR52 | low-molecular-weight cysteine-ri... 110 8e-24
> AT3G43505.1 | Symbols: LCR30 | low-molecular-weight cysteine-rich
30 | chr3:15402413-15402799 REVERSE LENGTH=231
Length=231
Score = 307 bits (166), Expect = 3e-83
Identities = 204/223 (91%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 1 ATGTCTAAAACCACCGTTATTGCTATTTTCATGATCGTCCTCGTTCTAGGGCTGGTGACA 60
||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||
Sbjct 1 ATGTCTAAAACCACCGTTATTGCTATTTTCATGGTTGTCCTCGTTTTAGGGCTTGTGACA 60
Query 61 AAGGAGACGCAAGGACAAGAATTGTGTCATGACTATATGTTAGGAGCAGAACCATGTGAA 120
|| |||||||||||||||||||||||||| |||||||||| |||| |||||| |||||||
Sbjct 61 AAAGAGACGCAAGGACAAGAATTGTGTCACGACTATATGTCAGGAACAGAACTATGTGAA 120
Query 121 GAAGACAAGTGTGTCGCTAAGTGTATTTGGAGGCATGGCACAGGTGGAAAAGGCTCGTGT 180
|||||||||||||| |||||||||||||||| ||| || |||| || ||||||| | |||
Sbjct 121 GAAGACAAGTGTGTAGCTAAGTGTATTTGGATGCACGGGACAGCTGCAAAAGGCACATGT 180
Query 181 ATGCCAAAGCCAAGCAAGCAATGCCTCTGTACTTATAGTTGCA 223
|||||||||||||||||||||||| |||| |||||||||||||
Sbjct 181 ATGCCAAAGCCAAGCAAGCAATGCGTCTGCACTTATAGTTGCA 223
> AT3G61175.1 | Symbols: LCR52 | low-molecular-weight cysteine-rich
52 | chr3:22642983-22643309 REVERSE LENGTH=234
Length=234
Score = 110 bits (59), Expect = 8e-24
Identities = 85/97 (88%), Gaps = 3/97 (3%)
Strand=Plus/Plus
Query 1 ATGTCTAAAACCACCGTTATTGCTATTTTCATGATCGTCCTCGTTCTAGGGCTGGTGAC- 59
||||||||| ||||| || | |||||||||||||||||||||||||||||| ||| ||
Sbjct 1 ATGTCTAAATCCACCATTCTCGCTATTTTCATGATCGTCCTCGTTCTAGGGAAGGTAACG 60
Query 60 AAAGGAGACGCAAGGACAAGAATTGTGTCATGACTAT 96
|||| ||||||||||||||||| |||||| ||| |||
Sbjct 61 AAAG-AGACGCAAGGACAAGAAATGTGTCGTGA-TAT 95
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10405424043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5