BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897096
Length=207
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25210.1 | Symbols: | DNA-binding storekeeper protein-relat... 294 2e-79
AT4G00130.1 | Symbols: | DNA-binding storekeeper protein-relat... 156 9e-38
> AT4G25210.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr4:12918328-12919742 FORWARD
LENGTH=1415
Length=1415
Score = 294 bits (159), Expect = 2e-79
Identities = 193/209 (92%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 1 TTCTTCAATGCAGAGAATAAGAGTTTTTGTGGTTTGGATGAAAT-CACAATAACTGCGGT 59
||| |||||||||| ||| ||||| |||||||||||||| ||| |||| ||||||||||
Sbjct 1019 TTCCTCAATGCAGATAATGGGAGTTCTTGTGGTTTGGATG-AATCCACATTAACTGCGGT 1077
Query 60 TTGGGCAAAGGTTGCGGATGGAGCAGAGAAGAGAGAAGTGGAGGAAAAATGGAAGAAGCT 119
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1078 TTGGGCAAAGGTTGCGGATGGAGCTGAGAAGAGAGAAGTGGAGGAGAAATGGAAGAAGCT 1137
Query 120 CAATGG-TAAGGAGTTTGAGCTATGTTTGCAGAGGTCTGGACTCGTGAACGAAACTGCAA 178
|| || |||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1138 TAA-GGCTAAGCAGTTTGAGCTATGTTTGCAGAGGTCTGGACTCGTGAATGAAACTGCAA 1196
Query 179 AGATGATATTCAAAGCCTATGAATCCTGA 207
||||||||||||||||||||||||| |||
Sbjct 1197 AGATGATATTCAAAGCCTATGAATCTTGA 1225
> AT4G00130.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr4:48266-49068 FORWARD LENGTH=733
Length=733
Score = 156 bits (84), Expect = 9e-38
Identities = 150/180 (83%), Gaps = 12/180 (7%)
Strand=Plus/Plus
Query 21 GAGTTTTTGTGGTTTGGATGAAATC-ACAA-TAACTGCGGTTTGGGCAAAGGTTGCGGAT 78
||||| |||||||||||||| |||| | || ||||| ||| ||||| ||| |||| ||||
Sbjct 550 GAGTTCTTGTGGTTTGGATG-AATCTA-AATTAACTACGGGTTGGGAAAATGTTGAGGAT 607
Query 79 GGAGCAGAGAAGAGAGAAGTGGAGGAAAAATGGAAGAAGCTCAATGG-TAAGGAGTTTGA 137
||||| ||||||||||||||||||||||||||||||||| | || || |||| ||||||
Sbjct 608 GGAGCTGAGAAGAGAGAAGTGGAGGAAAAATGGAAGAAGTTTAA-GGATAAGCTGTTTGA 666
Query 138 GCTATGTTTGC-AGAGGTCTG-GACTCGTGAACGAAACTGCAAA-GATGATATTCAAAGC 194
|||| ||| | ||||||||| | || ||||| |||||| || |||||| ||||||||
Sbjct 667 GCTAC-TTTACGAGAGGTCTGTG-CTTATGAACAAAACTG-AAGCGATGATGTTCAAAGC 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9255448584
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5