BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897123

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G15340.1 | Symbols: MBD10 | methyl-CPG-binding domain 10 | c...   113    1e-24


> AT1G15340.1 | Symbols: MBD10 | methyl-CPG-binding domain 10 | 
chr1:5275677-5277689 REVERSE LENGTH=1588
Length=1588

 Score =  113 bits (61),  Expect = 1e-24
 Identities = 87/99 (88%), Gaps = 4/99 (4%)
 Strand=Plus/Minus

Query  378  TCTTCAACTCCTCCAACAATCTCAGTCTTCTTCTCCAACTCAGAGGTATCCACTTCCATG  437
            |||||| ||||| |  || || ||| ||||||||||||||||||||||||||||||||||
Sbjct  916  TCTTCAGCTCCTTCTCCACTCCCAGCCTTCTTCTCCAACTCAGAGGTATCCACTTCCATG  857

Query  438  GACTCTTTCTTGTC-CGTCACAACTTCTCATCCTCTTTG  475
            |||||||||||||| | |||||||||||   ||||||||
Sbjct  856  GACTCTTTCTTGTCTC-TCACAACTTCTG--CCTCTTTG  821



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26322693028


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5