BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897125
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43750.1 | Symbols: | RING/U-box protein with C6HC-type zin... 968 0.0
AT3G45580.1 | Symbols: | RING/U-box protein with C6HC-type zin... 601 4e-171
AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zin... 322 3e-87
AT3G43180.1 | Symbols: | RING/U-box superfamily protein | chr3... 145 8e-34
AT3G45500.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 115 6e-25
> AT3G43750.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger domain | chr3:15646460-15647566 FORWARD LENGTH=1041
Length=1041
Score = 968 bits (524), Expect = 0.0
Identities = 681/754 (90%), Gaps = 22/754 (3%)
Strand=Plus/Plus
Query 1 ATGGGGAGATCCGTC-CCGGAGCAAGATAACATTGCCATGCTAATGAATGATGTGCAACG 59
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 ATGGGGAGATCC-ACGCCGGAGCAAGATAACATTGCCATGCTAATGAATGATGTGCAACG 341
Query 60 CATGAGACAACAATTGTCATCTAGTAATCCCATTCTGGTGACTAGAGATCAAATTAGCTT 119
|||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||
Sbjct 342 CATGAGACAACAATTGAGATATAGTAATCCTATTCTGGTGACTAGAGATCAAATTAGCTT 401
Query 120 TGCTTATAAGCTTGCAATGGAAACAGTAGCTTCGGATATCAGCATACGTATGCCTGCGAC 179
||||||||||||||||||||||||||||| ||| || ||||||||| |||||||||||||
Sbjct 402 TGCTTATAAGCTTGCAATGGAAACAGTAGTTTCCGAGATCAGCATATGTATGCCTGCGAC 461
Query 180 TTGCAGCATCTGTTTCAATGATGATTTGGAAGCTGAGCAGATGTATTCTGTTCCCT-TAT 238
||||||||||||||||||| ||| ||||||||||||| |||||| ||||||| || |||
Sbjct 462 TTGCAGCATCTGTTTCAATAATGTTTTGGAAGCTGAGAAGATGTTTTCTGTT-GCTATAT 520
Query 239 GCGGTCATCAATTCTGTGTCGAGTGCGTGAGACGA-CATATAGAAGTGAGGCTACTCGAG 297
||||||||||||||||||| |||||||||| || | |||||||||||| ||||||||||
Sbjct 521 GCGGTCATCAATTCTGTGTGGAGTGCGTGAAAC-ATTATATAGAAGTGAAGCTACTCGAG 579
Query 298 GGAAGTGTACCGACATGTCTTCATTATCAATGCGAGTCTAAGCTAACTCTTAGAAGTTGT 357
||| ||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 580 GGAGGTGTACCGAGATGTCTTGATTATCAATGCGAGTCTAAGCTAACTCTTACAAGTTGT 639
Query 358 GACAATCTTTTAACACCTAAACTAAAAGCGATATGGGAA-CAAAGGATCGAAGAGGAATT 416
| |||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| ||
Sbjct 640 GGCAATCTTTTAACACCTAAACTAAAGGCGATAT-GGAAGCAAAGGATCGAAGAGGAGTT 698
Query 417 GATTCCTGT-GCCGGATAGAGTTTATTGTCCAAAACCGACGTGCGCGGGATTAATGTCGA 475
||||| ||| | |||| ||||||||||||||||| |||| |||| |||||||||||||||
Sbjct 699 GATTCTTGTAG-CGGAGAGAGTTTATTGTCCAAACCCGAGGTGCTCGGGATTAATGTCGA 757
Query 476 AAACCGAGCTTTCTACCTCAACTGAAGAAGATG-AAGGTAGTAGGAGTTGTTGTGTCAAA 534
|||||||||| ||||| |||||||||||||||| || ||| ||||| ||||||||| |||
Sbjct 758 AAACCGAGCTCTCTACATCAACTGAAGAAGATGTAA-GTACTAGGACTTGTTGTGTTAAA 816
Query 535 TGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCGTGGCATAGTAACTTGTCATGCGAT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 TGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCGTGGCATAGTAACTTGTCATGCGAT 876
Query 595 GATTACAAGAGATTAGGTCTGAATCCTACAACAAATGATGAAAAA-CTAAAAGTTCTAGC 653
|||||||||||||| |||| |||||||||| ||||||| | ||| ||||||||| | ||
Sbjct 877 GATTACAAGAGATTGGGTCCAAATCCTACAAAAAATGAT-ATAAAGCTAAAAGTTTTGGC 935
Query 654 AAATCAG-AAAATGTGGCGTCAATGTGAAAAGTGCAAACACATGATCGAACTT-TCGAAA 711
||||||| |||| |||| ||||||||| ||||||| |||||||||| | || | |||||
Sbjct 936 AAATCAGCAAAA-GTGGAGTCAATGTGCAAAGTGCCAACACATGATTGCACGTATCGAA- 993
Query 712 GGATGCATCC-ATGTAA-CTTGCAGGTATCATCA 743
||||||| | | ||| || |||||||||||||
Sbjct 994 GGATGCAACGTAA-TAATCT-GCAGGTATCATCA 1025
> AT3G45580.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr3:16729989-16731511 REVERSE LENGTH=1227
Length=1227
Score = 601 bits (325), Expect = 4e-171
Identities = 599/729 (82%), Gaps = 28/729 (4%)
Strand=Plus/Plus
Query 23 AAGATAACATTGCCATGCTAATGAATGATGTGCAACGCATGAGACAACAATTGTCATCTA 82
|||| ||| ||||| | |||||| || | || |||| ||| ||||||| |||| | ||||
Sbjct 350 AAGAGAACTTTGCCTTACTAATGGATAACGTTCAACACATTAGACAACGATTGACGTCTA 409
Query 83 G-TAATCCCATTCTGGTGACTA-GAGATCAAATTAGCTTTGCT-TAT-AAGCTTGCAATG 138
| | ||| |||||||||||| || ||||||||| |||| | ||| || |||||||||
Sbjct 410 GCT-TTCCTGTTCTGGTGACTAGGA-ATCAAATTAAATTTG-TGTATGAA-CTTGCAATG 465
Query 139 GAAACAGTAGCTTCGGATATCAGCATAC--GTA--TG--CCTG-C--GACTTGCAGCATC 189
|||||| ||| ||| || |||||||||| || || | || | ||||||||| ||
Sbjct 466 GAAACAATAGTTTCTGAAATCAGCATACATATACCTGATCATGACAAGACTTGCAGTATA 525
Query 190 TGTTTCAATGATGATTTGGAAGCTGAGCAGATGTATTCTGTTCCCTTATGCGGTCATCAA 249
|||| | ||||| |||| ||| |||||| ||||| ||||||| | |||||||||||| ||
Sbjct 526 TGTTCCGATGATAATTTCGAACCTGAGCTGATGTTTTCTGTTGCTTTATGCGGTCATGAA 585
Query 250 TTCTGTGTCGAGTGCGTGAGACGACATATAGAAGTGAGGCTACTCGAGGGAAGTGTACCG 309
|||||||| |||||||| | |||||||||||||||||||||||||| |||| ||||||||
Sbjct 586 TTCTGTGTTGAGTGCGTAAAACGACATATAGAAGTGAGGCTACTCGCGGGAGGTGTACCG 645
Query 310 ACATGTCTTCATTATCAATGCGAGTCTAAGCTAACTCTTAG-AAGTTGTGACAATCTTTT 368
| ||||||||||||||||||||||||||| || |||||| | || || | |||||||||
Sbjct 646 AGATGTCTTCATTATCAATGCGAGTCTAAACTTACTCTT-GCAAACTGCGCCAATCTTTT 704
Query 369 AACACCTAAACTAAAAGCGATATGGGAACAAAGGATCGAAGAGGAAT-TGATTCCTGTGC 427
||| ||||||||||||| || ||||||| ||||||||||||||||| | |||||||||
Sbjct 705 GACATCTAAACTAAAAGCAATGTGGGAACTAAGGATCGAAGAGGAATCT-ATTCCTGTGG 763
Query 428 CGGATAGAGTTTATTGTCCAAAACCGACGTGCGCGGGATTAATGTCGAAAACCGAGCTTT 487
||| ||||| ||||| || || || | |||| || | ||||||||| |||| |||| |
Sbjct 764 AGGAGAGAGTATATTGCCCCAACCCTAGGTGCTCGAGTTTAATGTCGGTAACCAAGCTCT 823
Query 488 CTACCTCAACTGAAGAAGATGAAGGT-AGTAGGAGTTGTTGTGTCAAATGCGGTGAACCC 546
| | |||||| ||| ||| | | || | || ||| ||||||| |||||||||||||||
Sbjct 824 CAAACTCAAC--AAG-AGAAG-ATGTAACTATGAGAAGTTGTGTAAAATGCGGTGAACCC 879
Query 547 TTTTGCATCAACTGCAAAGTTCCGTGGCATAGTAACTTGTCATGCGATGATTACAAGAGA 606
||||| |||||||||||| ||||||||||||| |||||||| ||| | |||||||||||
Sbjct 880 TTTTGTATCAACTGCAAACTTCCGTGGCATAGCAACTTGTCGTGCAACGATTACAAGAGC 939
Query 607 TTAGGTCTGAATCCTACAACAAATGATGA-AAAACTAAAAGTTCTAGCAAATCAGAAAAT 665
|| |||| ||||||||| || ||||| | ||| || |||| ||||||||||||||||||
Sbjct 940 TTGGGTCCAAATCCTACAGCAGATGAT-ATAAAGCTGAAAGCTCTAGCAAATCAGAAAAT 998
Query 666 GTGGCGTCAATGTGAAAAGTGCAAACACATGATCGAACTTTCGAAAGGATGCATCCATGT 725
|||||||||||||||||| |||||| || | |||||||| ||| |||||||||| ||| |
Sbjct 999 GTGGCGTCAATGTGAAAATTGCAAAAACGTAATCGAACTATCGGAAGGATGCATGCATAT 1058
Query 726 AACTTGCAG 734
||||||||
Sbjct 1059 CACTTGCAG 1067
> AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr3:16683204-16684592 REVERSE LENGTH=1208
Length=1208
Score = 322 bits (174), Expect = 3e-87
Identities = 482/626 (77%), Gaps = 39/626 (6%)
Strand=Plus/Plus
Query 1 ATGGGGAGATCCGT-CC--CGGAGCAAGATAACATTGCCATGCTAATGAATGATGTGCAA 57
||||||||||| || || ||| |||| || || ||| || ||||| |||| ||||||
Sbjct 280 ATGGGGAGATCTGTGCCTAAGGA-TAAGA-AA-ATCGCCTTGATAATGGATGAGGTGCAA 336
Query 58 CGCATGAGACAACAATTGTCATCTAGTAATCCC-ATTCTGGTGACTAG-AGATCAAATT- 114
||||| ||||||||||| |||||||| ||||| |||| ||| |||| | || |||||
Sbjct 337 CGCATAAGACAACAATTTTCATCTAG-CATCCCTTTTCTTGTGGCTAGTA-ATGAAATTA 394
Query 115 AGCTTTGCT-TATAAGCTTGCAATGGAAACAGTAGCTTCGGATATCAGCATACGTATGCC 173
|| |||| | ||||| ||||||| ||||||| ||| ||| | |||||||||| || |||
Sbjct 395 AG-TTTG-TGTATAAACTTGCAAAGGAAACACTAGTTTCTAACATCAGCATACCTAGGCC 452
Query 174 T-----G-CGACTTGCAGCATCTGTTTCAATGATGATTTGGAAGCTGAGCAGATGTATTC 227
| | |||||| | | |||||| || |||| | | ||| |||| | |||| |||
Sbjct 453 TCAGAAGAAGACTTGTGGTAACTGTTTTAACGATGGTATCAAAGGTGAGAACATGTTTTC 512
Query 228 TGTTCCCTTATGCGGTCATCAATTCTGTGTCGAGTGCGTGAGACG-ACATATAGAAGTGA 286
| | |||||| ||||| | |||||||| |||||| ||| | | |||||||||||| |
Sbjct 513 CGCTGATTTATGCAGTCATTACTTCTGTGTGGAGTGCATGA-AGGAACATATAGAAGTCA 571
Query 287 GGCTACTCGAGGGAAGTGTACCGACATGTCTTCATTATCAATGCGA-GTCTAAGCTAACT 345
| ||| ||||||| || |||||| ||||| |||| || ||| | || || ||||||
Sbjct 572 GTCTAAACGAGGGAGGTTTACCGAGATGTCCTCATGATGGCTGC-ACATCAAACCTAACT 630
Query 346 CTTAGAAGTTGTGACAATCTTTTAACACCTAAACTAAA-AGCGATATGGGAACAAAGGAT 404
|||||||| |||||| ||||||| |||||||||| ||| || ||| |||||| |||||||
Sbjct 631 CTTAGAAGCTGTGACCATCTTTTGACACCTAAAC-AAAGAGAGATGTGGGAAAAAAGGAT 689
Query 405 CGAAGAGGAATTGATTCCTGTGCCG-GATAGAGTTT-ATTGTCCAAAACCGACGTGCGCG 462
| ||||||| | |||||||| | || ||| ||| |||| ||||| || | |||| |
Sbjct 690 CAAAGAGGAGTCAATTCCTGT-ATGTGACAGA-TTTCATTGCCCAAATCCAAGGTGC-TG 746
Query 463 GG-ATTAATGTCGAAAACCGAGCTTTCT-ACCTCAACTGAAGAAGATGAAGGTAGTAGGA 520
|| || |||||||| || ||||| || | || ||||||||||||| | || |||||
Sbjct 747 GGCTTTGATGTCGAAGACGGAGCTCACTGA-ATCTACTGAAGAAGATGGA-GT--TAGGA 802
Query 521 GTTGTTG-TGTCAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCGTGGCATAGT 579
| ||||| | | |||||| | ||| |||||| || ||||||||||||||||||||||||
Sbjct 803 GATGTTGCTAT-AAATGCCGCAAACACTTTTGTATTAACTGCAAAGTTCCGTGGCATAGT 861
Query 580 AACTTGTCATGCGATGATTACAAGAG 605
|||||||| ||| | || |||||||
Sbjct 862 AACTTGTCGTGCAAGGAACACAAGAG 887
> AT3G43180.1 | Symbols: | RING/U-box superfamily protein | chr3:15178043-15178937
FORWARD LENGTH=576
Length=576
Score = 145 bits (78), Expect = 8e-34
Identities = 86/90 (96%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 516 TAGGAGTTGTTGTGTCAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCGTGGCA 575
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 419 TAGGAGATGTTGTGTCAAATGCGGTGAACCCTTTTGCATCAACTGCAAAGTTCCATGGCA 478
Query 576 TAGTAACTTGTCATGCGATGATTACAAGAG 605
|||| |||||||||||| ||||||||||||
Sbjct 479 TAGTGACTTGTCATGCGGTGATTACAAGAG 508
> AT3G45500.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1);
Has 48 Blast hits to 46 proteins in 4 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:16688418-16689693 REVERSE LENGTH=606
Length=606
Score = 115 bits (62), Expect = 6e-25
Identities = 77/84 (92%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 652 GCAAATCAGAAAATGTGGCGTCAATGTGAAAAGTGCAAACACATGATCGAACTTTC-GAA 710
|||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| |||
Sbjct 422 GCAAATCAGAAAATGTGGCGTCAATGTGGAAAGTGCCAACACATGACCGAACTTTCAGAA 481
Query 711 AGGATGCATCCATGTAACTTGCAG 734
||||||||| | |||||||||||
Sbjct 482 -GGATGCATCAAAGTAACTTGCAG 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5