BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897135
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
AT2G03935.1 | Symbols: | pseudogene similar to putative carbox... 246 6e-65
> AT2G03935.1 | Symbols: | pseudogene similar to putative carboxyl-terminal
proteinase | chr2:1227749-1228433 REVERSE LENGTH=585
Length=585
Score = 246 bits (133), Expect = 6e-65
Identities = 222/264 (84%), Gaps = 9/264 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGGATCAGCAGTC-CGGAAACTAGTGGCTGAGTTTGGGATCCAAGC-ATTCATTG 58
|||||||||||| || | | |||||| |||| ||||| |||||||||| | ||||||||
Sbjct 141 ATGGAAGGATCAAAAG-CACAGAAACTGGTGGTTGAGTGTGGGATCCAA-CAATTCATTG 198
Query 59 ATAGGATATTGGCCAGCTGCA-ATTTTCCA-AAAGTTAGCTTATGCAGACGA-GTGCAAT 115
| ||||| |||||||| | | ||||| || ||| |||||||||| |||||| |||||||
Sbjct 199 GTTGGATACTGGCCAGCCG-AGATTTT-CACAAATTTAGCTTATGGAGACGAGGTGCAAT 256
Query 116 GGGGTGTTGAGTTCGTGAATTCGCAAAGTTTTGGCCGACACACGACAACACAGATGGGAT 175
|||||| |||| ||||||| || ||||||| |||||||| |||||||| |||||||| |
Sbjct 257 GGGGTGGTGAGATCGTGAACTCACAAAGTTCCGGCCGACATACGACAACCCAGATGGGCT 316
Query 176 CTGGTCGTTTCTCCGACGAAGGCTTCAGCAAAGTTAGCTACTTTCACAACTTGGAGATCG 235
| |||| ||| || | ||| ||||| |||||||||||||||| | ||||||||||||||
Sbjct 317 CCGGTCACTTCCCCAATGAAAGCTTCGGCAAAGTTAGCTACTTGCGCAACTTGGAGATCG 376
Query 236 TAGATAACAACATATTCAAGTCCG 259
||||||||||||||||| || |||
Sbjct 377 TAGATAACAACATATTCCAGCCCG 400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12064259760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5