BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897140
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 693 0.0
> AT3G43850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: vacuole; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G21940.1); Has 215 Blast
hits to 215 proteins in 19 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr3:15702085-15704152
REVERSE LENGTH=813
Length=813
Score = 693 bits (375), Expect = 0.0
Identities = 575/665 (86%), Gaps = 39/665 (6%)
Strand=Plus/Plus
Query 1 ATGTTTAGGGTCATTGACAAGAGCGATCGGACTTTCACGGCGGATCAAGAATTTGCTTGC 60
||||||| | ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1 ATGTTTACTGCCATTGACAAGATTGATCGGACTTTCACGGTGGATCAAGAATTTGCTTGC 60
Query 61 TTATCGTCGACGTCTTCGACTTTTGATTCGATCGGGAAGAACAGTGAGGACGATGAAGGT 120
||||||| |||| || ||| ||||||||||||| |||||||||| ||||||||||||
Sbjct 61 TTATCGT---CGTCGACGTCTTCTGATTCGATCGGGGAGAACAGTGACGACGATGAAGGT 117
Query 121 GGAGAGAATGAGATTGAGTCTGCTTACAAAGGTCCTCTTGATATGATGGAGTCTCTTGAA 180
||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 118 GGAGAGAATGAGATTGAGTCTTCTTACAATGGTCCTCTTGATATGATGGAATCTCTTGAA 177
Query 181 GAAGCCTTGCCCATCAAGAGAGGGATATCGAAGTTTTACAAAGGAAAGTCGATGTCGTTC 240
|||||||||||||||||||||| ||||| |||||||||||||| ||||| | |||||||
Sbjct 178 GAAGCCTTGCCCATCAAGAGAGCTATATCAAAGTTTTACAAAGGGAAGTCAAAGTCGTTC 237
Query 241 ACGAGCTTATCGGAAACAGCATCTTTGCCGGTGAAGGATTTGACGAAACTGGAGAATCCT 300
| ||||||||||||||| ||||||||||||||||||| |||||||||| |||||||| |
Sbjct 238 ATGAGCTTATCGGAAACTTCATCTTTGCCGGTGAAGGACTTGACGAAACCGGAGAATCTT 297
Query 301 TATAGTCGCCGGCGGAGGAATCTTCTCAGTCATCGTATACGTAGTCGTGGTGGGATCTCG 360
|||||||| ||| ||||||||||||||||||| || ||| |||||||||||||||||||
Sbjct 298 TATAGTCGTCGGAGGAGGAATCTTCTCAGTCACCGGATATGTAGTCGTGGTGGGATCTCA 357
Query 361 AAGAAACCGGTCAAGAGTGTTTTAGCGGTGGCCGTGATGGCGATATGTCAAAGAGAAGGA 420
||||| || ||||||||||||||||| ||| | ||||| ||||||||
Sbjct 358 AAGAAGCCATTCAAGAGTGTTTTAGCG---------ATG---A---GTCAACGAGAAGGA 402
Query 421 GACTCTTCTTCTTCCTCCGGTGATGATTCTCTTCCGCCTCCGGGGAAGTATCATAAGAAT 480
||||||||||| | ||||||||||||||||||||| ||| || || ||||||||| |
Sbjct 403 GACTCTTCTTC--C-TCCGGTGATGATTCTCTTCCGACTCTAAGGCAGCATCATAAGACT 459
Query 481 CT--C-CCGAGGCAGAGAAA-GGG-GTCTTTGGAAGCTTTTACATTTCAAGACAAAAGCG 535
|| | ||||||| |||||| ||| || |||| |||||||||||||||||||||||||||
Sbjct 460 CTTACGCCGAGGCTGAGAAAAGGGAGT-TTTG-AAGCTTTTACATTTCAAGACAAAAGCG 517
Query 536 AGAAGGATGAGGATCGCAAGAAGGCCACCAAAGGAGCCACAAAGCCTGTGAATCCAATAG 595
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 518 AGACGGATGAGGATCACAAGAAGGCCACCAAAGGAGCCACAAAGCCTGTGAATC-AA-A- 574
Query 596 GGATCAAACCTGGTCAAGCTCTGGTCACAGTACAGAGACAAGGCAATGGCCATGATCAAG 655
| | |||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 575 ----C---C-TGGTCAAGCTCTGGTCACAGTATAAAGACAAGGCAATGGCCAAGATCAAC 626
Query 656 AATAG 660
|||||
Sbjct 627 AATAG 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5