BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg897146 Length=921 Score E Sequences producing significant alignments: (Bits) Value AT3G43960.1 | Symbols: | Cysteine proteinases superfamily prot... 191 1e-47 > AT3G43960.1 | Symbols: | Cysteine proteinases superfamily protein | chr3:15774055-15775657 REVERSE LENGTH=1227 Length=1227 Score = 191 bits (103), Expect = 1e-47 Identities = 274/352 (78%), Gaps = 30/352 (9%) Strand=Plus/Plus Query 274 AGGTATCGGTACAAGGAAGGAGATAATTTGCCAGATGAAGTCGATTGGAGGGAGAGAGGA 333 ||||||| |||||| ||||||||| ||| || |||||||| |||||||||||||||||| Sbjct 381 AGGTATCAGTACAAAGAAGGAGATGTTTTACCTGATGAAGTTGATTGGAGGGAGAGAGGA 440 Query 334 GCAGTTGTTGAACAAGAGATATCTAAAA-ACCTA--AGA-----G--GTTGTTGGGCATT 383 ||||||||| |||||| || |||| | | | ||| | |||||||||| || Sbjct 441 GCAGTTGTT--CCAAGAG---TC-AAAAGA-CAAGGAGAGTGTGGAAGTTGTTGGGCGTT 493 Query 384 TTCGGCGGCTGGAGCGGTGGAAGGTATAAACCAGATCACAACCGGAGAATT-GATATCTT 442 | | ||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 494 TGCCGCGACTGGAGCGGTGGAAGGTATAAACCAGATCACAACCGGAGAATTAG-TATCTT 552 Query 443 TGTCAGAACAACAACTCATTGACTGCGCTACAGA-AAC--CAA-TGACCGATGTGATGGA 498 | || |||||| ||||||||||||||| || || ||| ||| | |||||| ||| Sbjct 553 TATCGGAACAAGAACTCATTGACTGCGATAGAGGGAACGACAACTTTG-GATGTGCTGGT 611 Query 499 GGTG-ACGCGGCATACGCTTTT-ATGTTCATTAAGGAAAATGGTGGTATAGTAACAAATA 556 |||| | || | || || ||| | |||||||||||| || |||||||| ||| | || Sbjct 612 GGTGGA-GCAGTATGGGCCTTTGA-GTTCATTAAGGAGAACGGTGGTATTGTATCCGATG 669 Query 557 AAGATTACCCTTTTACTGGCGATAAAAA-TGCAACGTGCAAGGCCATTGAGA 607 ||| ||| || ||| || || | | | ||| | |||||||||||||||| Sbjct 670 AAGTTTATGGTTATACCGGTGA-AGATACTGCCGCATGCAAGGCCATTGAGA 720 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45009795712 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5