BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897146

Length=921
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G43960.1 | Symbols:  | Cysteine proteinases superfamily prot...   191    1e-47


> AT3G43960.1 | Symbols:  | Cysteine proteinases superfamily protein 
| chr3:15774055-15775657 REVERSE LENGTH=1227
Length=1227

 Score =  191 bits (103),  Expect = 1e-47
 Identities = 274/352 (78%), Gaps = 30/352 (9%)
 Strand=Plus/Plus

Query  274  AGGTATCGGTACAAGGAAGGAGATAATTTGCCAGATGAAGTCGATTGGAGGGAGAGAGGA  333
            ||||||| |||||| |||||||||  ||| || |||||||| ||||||||||||||||||
Sbjct  381  AGGTATCAGTACAAAGAAGGAGATGTTTTACCTGATGAAGTTGATTGGAGGGAGAGAGGA  440

Query  334  GCAGTTGTTGAACAAGAGATATCTAAAA-ACCTA--AGA-----G--GTTGTTGGGCATT  383
            |||||||||   ||||||   || |||| | | |  |||     |  |||||||||| ||
Sbjct  441  GCAGTTGTT--CCAAGAG---TC-AAAAGA-CAAGGAGAGTGTGGAAGTTGTTGGGCGTT  493

Query  384  TTCGGCGGCTGGAGCGGTGGAAGGTATAAACCAGATCACAACCGGAGAATT-GATATCTT  442
            | | ||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct  494  TGCCGCGACTGGAGCGGTGGAAGGTATAAACCAGATCACAACCGGAGAATTAG-TATCTT  552

Query  443  TGTCAGAACAACAACTCATTGACTGCGCTACAGA-AAC--CAA-TGACCGATGTGATGGA  498
            | || |||||| ||||||||||||||| || ||  |||  ||| |    |||||| ||| 
Sbjct  553  TATCGGAACAAGAACTCATTGACTGCGATAGAGGGAACGACAACTTTG-GATGTGCTGGT  611

Query  499  GGTG-ACGCGGCATACGCTTTT-ATGTTCATTAAGGAAAATGGTGGTATAGTAACAAATA  556
            |||| | || | ||  || ||| | |||||||||||| || |||||||| ||| |  || 
Sbjct  612  GGTGGA-GCAGTATGGGCCTTTGA-GTTCATTAAGGAGAACGGTGGTATTGTATCCGATG  669

Query  557  AAGATTACCCTTTTACTGGCGATAAAAA-TGCAACGTGCAAGGCCATTGAGA  607
            ||| |||   || ||| || || | | | |||  | ||||||||||||||||
Sbjct  670  AAGTTTATGGTTATACCGGTGA-AGATACTGCCGCATGCAAGGCCATTGAGA  720



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45009795712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5