BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897155

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G43980.1 | Symbols:  | Ribosomal protein S14p/S29e family pr...   268    9e-72
  AT3G44010.1 | Symbols:  | Ribosomal protein S14p/S29e family pr...   263    4e-70


> AT3G43980.1 | Symbols:  | Ribosomal protein S14p/S29e family 
protein | chr3:15778402-15779311 REVERSE LENGTH=400
Length=400

 Score =  268 bits (145),  Expect = 9e-72
 Identities = 161/169 (95%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  1    ATGGGTCACTCTAATGTCTGGAACTCTCATCCGAAGAAGTACGGACCTGGATCTCGTTTA  60
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  77   ATGGGTCACTCTAATGTCTGGAACTCTCATCCGAAGAAGTACGGTCCTGGATCTCGTTTA  136

Query  61   TGCCGTGTGTGCGGGAACTCCCACGGGCTGATCAGGAAGTATGGATTGAACTGCTGCAGA  120
            |||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||
Sbjct  137  TGCCGTGTGTGCGGGAACTCACACGGGCTTATCAGGAAGTATGGTTTGAATTGCTGCAGA  196

Query  121  CAGTGTTTCCGCAGCAACGCCAAGGAGATTGGATTCATCAAGTACCGTT  169
            |||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct  197  CAGTGTTTCCGCAGTAACGCCAAGGAGATCGGATTCATTAAGTACCGTT  245


> AT3G44010.1 | Symbols:  | Ribosomal protein S14p/S29e family 
protein | chr3:15799931-15801200 REVERSE LENGTH=483
Length=483

 Score =  263 bits (142),  Expect = 4e-70
 Identities = 160/169 (95%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  1    ATGGGTCACTCTAATGTCTGGAACTCTCATCCGAAGAAGTACGGACCTGGATCTCGTTTA  60
            ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct  69   ATGGGTCACTCTAATGTATGGAACTCTCATCCGAAGAAGTACGGTCCTGGATCTCGTTTA  128

Query  61   TGCCGTGTGTGCGGGAACTCCCACGGGCTGATCAGGAAGTATGGATTGAACTGCTGCAGA  120
            |||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||
Sbjct  129  TGCCGTGTGTGCGGGAACTCGCACGGTCTGATCCGGAAGTATGGTTTGAACTGCTGCAGA  188

Query  121  CAGTGTTTCCGCAGCAACGCCAAGGAGATTGGATTCATCAAGTACCGTT  169
            ||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct  189  CAGTGTTTCCGTAGCAACGCTAAGGAGATTGGATTCATTAAGTACCGTT  237



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7444599948


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5