BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897156

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44020.1 | Symbols:  | thylakoid lumenal P17.1 protein | chr...   606    5e-173


> AT3G44020.1 | Symbols:  | thylakoid lumenal P17.1 protein | chr3:15801372-15802730 
FORWARD LENGTH=659
Length=659

 Score =  606 bits (328),  Expect = 5e-173
 Identities = 435/483 (90%), Gaps = 21/483 (4%)
 Strand=Plus/Plus

Query  1    ATGGCCACTCGACctctcatctctctgcaacttc--t-ttcttcttcttcatcttcttTG  57
            ||||||| ||||||||||||||||||||||||||  | |||||||||||||||||| | |
Sbjct  11   ATGGCCAGTCGACCTCTCATCTCTCTGCAACTTCTTTCTTCTTCTTCTTCATCTTCCTCG  70

Query  58   TT-AAACCAAACACCACAACTTCTC-TCTTATCAGAAACCAGAGCTAATCAG---CCACC  112
            || ||||| |||| || |||||||| |||| ||| ||||| || ||||| ||   |||||
Sbjct  71   TTAAAACC-AACAACAAAACTTCTCTTCTT-TCATAAACCTGAACTAATTAGCCACCACC  128

Query  113  ATAGAAA--GT-----G--GTCACGAACAAGTGCTCATCAATC-CTCAGCTAATTTCATC  162
            |||||||  ||     |  |||||| ||||||| ||||||| | |||||||||| |||||
Sbjct  129  ATAGAAACCGTAACAAGTTGTCACGGACAAGTGTTCATCAA-CACTCAGCTAATCTCATC  187

Query  163  ATTCACCCTTCTGTTCTTTTCCTAAGTAGCGGCTTCGATGGCGGTGGCGGATTCATCGAT  222
            ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct  188  ATTCACCCTTCTGTTCTTTTCCTAAGTAGCGCCTTCGATGGCGGTGGAGGATTCATCGAT  247

Query  223  ACACAGACTTTCATTGTTACTATCAGTCTCGTTGTAGCCATTGCTCTATCTCTCTTCCTC  282
            ||||||||||| ||||| || || ||||||||||||||||||||||| || || ||||||
Sbjct  248  ACACAGACTTTTATTGTCACCATTAGTCTCGTTGTAGCCATTGCTCTCTCACTATTCCTC  307

Query  283  GGCTTCAAGGGAGATCCAGTTCCATGTGAGAGATGTGGTGGAAATGGCGGAACGAAATGT  342
            ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct  308  GGCTTCAAGGGAGATCCAGTTCCTTGTGAGAGATGTGGTGGAAACGGCGGAACGAAATGT  367

Query  343  GTATTCTGCCTCGAAGGGAAGATGAAGGTGGAATCTGGCATGGTTAATTGCAAAGTCTGC  402
            ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  368  GTATTTTGCCTAGAAGGGAAGATGAAGGTGGAATCTGGCATGGTTGATTGCAAAGTCTGC  427

Query  403  AAAGGTTCAGGTTTGATTTTTTGCAAGAAATGTGGAGGTTCTGGATATTCTCGCCGTTTA  462
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  428  AAAGGTTCAGGTTTGATTTTTTGCAAGAAATGTGGAGGTTCCGGATATTCTCGCCGTTTA  487

Query  463  TAA  465
            |||
Sbjct  488  TAA  490



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5