BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897162

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G41000.1 | Symbols: YSL4 | YELLOW STRIPE like 4 | chr5:16420...  91.6    4e-18


> AT5G41000.1 | Symbols: YSL4 | YELLOW STRIPE like 4 | chr5:16420780-16423830 
FORWARD LENGTH=2276
Length=2276

 Score = 91.6 bits (49),  Expect = 4e-18
 Identities = 60/65 (92%), Gaps = 2/65 (3%)
 Strand=Plus/Minus

Query  1    AACAAAATCCCTAACAAGGCGCTAGAGATTAAGCCTCAGA-TCGTGATCTGGTCTTTCCA  59
            ||||||||||||||||||||||||||||| ||||||| || |||||||||| || |||||
Sbjct  279  AACAAAATCCCTAACAAGGCGCTAGAGATCAAGCCTC-GAATCGTGATCTGTTCCTTCCA  221

Query  60   CTCGG  64
            |||||
Sbjct  220  CTCGG  216



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5