BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897165

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G67280.1 | Symbols: RLK | receptor-like kinase | chr5:268422...   292    1e-78
  AT3G09780.1 | Symbols: CCR1, ATCRR1 | CRINKLY4 related 1 | chr3...   196    1e-49


> AT5G67280.1 | Symbols: RLK | receptor-like kinase | chr5:26842270-26845190 
REVERSE LENGTH=2480
Length=2480

 Score =  292 bits (158),  Expect = 1e-78
 Identities = 182/194 (94%), Gaps = 0/194 (0%)
 Strand=Plus/Plus

Query  190  ATTTCGGGTGGTTTCAAGTCGACGGAGTATCTTGATCTGTCGTCAAATCTCATCAAAGGC  249
            ||| |||| ||||| ||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct  626  ATTCCGGGAGGTTTTAAGTCGACGGAGTATCTTGATCTCTCGTCAAATTTGATCAAAGGC  685

Query  250  TCGTTGCCGTCACGTTTCAGAGGGAATCGTTTACGCTATTTCAACGCTTCGAACAACAGA  309
            ||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct  686  TCGTTGCCGTCACATTTCAGAGGGAATCGTCTACGCTATTTCAACGCTTCGTACAACAGA  745

Query  310  ATCTCCGGCGAGATTCCGTCAGGTTTCGCCGATGAAATCCCGGAAAACGCCACCGTCGAT  369
            |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||
Sbjct  746  ATCTCCGGCGAGATTCCGTCAGGTTTCGCCGACGAAATCCCGGAAGACGCCACCGTTGAT  805

Query  370  CTCTCATTCAACCA  383
            ||||||||||||||
Sbjct  806  CTCTCATTCAACCA  819


> AT3G09780.1 | Symbols: CCR1, ATCRR1 | CRINKLY4 related 1 | chr3:3000759-3003179 
REVERSE LENGTH=2421
Length=2421

 Score =  196 bits (106),  Expect = 1e-49
 Identities = 130/142 (92%), Gaps = 0/142 (0%)
 Strand=Plus/Minus

Query  1    ATGGCGCAGAAGAAAGCAGAGCCACCGAACGCCGCCGCGATTGGGCCAGAGGATCCAAAT  60
            ||||||||||||||||||||||| ||||||| |||||| || || || ||||||||||||
Sbjct  142  ATGGCGCAGAAGAAAGCAGAGCCGCCGAACGACGCCGCAATCGGACCGGAGGATCCAAAT  83

Query  61   CCGGATCCGGGTTTGGGCAAAAACAGgagaatgagagagagaaagaggagaaagaaATGG  120
            ||||||||||||||||||||| ||||||||||||||||||||||||||||| || || ||
Sbjct  82   CCGGATCCGGGTTTGGGCAAATACAGGAGAATGAGAGAGAGAAAGAGGAGAGAGCAACGG  23

Query  121  GCTTCCATTGGAGATGAAGTTC  142
            | ||||||||||| ||||||||
Sbjct  22   GTTTCCATTGGAGGTGAAGTTC  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18397996134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5