BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897167
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1074 0.0
AT3G48630.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 272 3e-72
> AT3G44150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G11800.1); Has 76 Blast hits to 75 proteins in 19
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 74; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink). | chr3:15887587-15888848 FORWARD LENGTH=891
Length=891
Score = 1074 bits (581), Expect = 0.0
Identities = 656/692 (95%), Gaps = 5/692 (1%)
Strand=Plus/Plus
Query 72 AACCGTAGCCATAGGCGGAGACGGCGGAGG---AAGTAACACCAACAAC-ATCTATTCCC 127
|||||||||| ||||||||||| ||||||| | ||||||||||| || |||||||| |
Sbjct 81 AACCGTAGCCTTAGGCGGAGACAGCGGAGGTTCAGGTAACACCAAC-ACTATCTATTCAC 139
Query 128 CATGCTCCGACACCAGAATCCAAAGATCCGATGGATTCACATTCGGAATCGCAttctctt 187
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 140 CATGCTCCGACACCCGAATCCAAAGATCCGATGGATTCACATTCGGTATCGCATTCTCTT 199
Query 188 ctcgtccttctttcttcttaaaccaaacggttcttctctctcCCTGTGACCGTCGACTTT 247
||||||| || |||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 200 CTCGTCCCTCCTTCTTCATAAACCAAACGGTTCTTCTCTCTCCCTGTGACCGCCGCCTTT 259
Query 248 CCCTCGCCGCCATGAATTCACAGTTCTCTCTCTTCCGTCCTAAAATCGACGAGATCTCTC 307
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 260 CCCTCGCCGCCATGAATTCACAGTTCTCTGTTTTCCGTCCTAAAATCGACGAGATCTCTC 319
Query 308 TCCTCTCCATCAACACCTCCGCCTTCTTCCCGGACAACTATGGTGGATATATGGTGGCAT 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 320 TCCTCTCCATCAACACCTCCGCCTTCTTCCCGGACAACTATGGTGGATATATGGTAGCAT 379
Query 368 TTGCGGGTCGAAAATATGCAGCGAGGTCTATACCGGCTTTTATTGCTAACAGCACGTTTA 427
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 380 TCGCGGGTCGAAAATACGCAGCGAGGTCTATACCGGCTTTTATTGCTAATAGCACCTTCA 439
Query 428 TCGTAACCAGTTTTACTTTGGTGATGGAGTTTCAGAAAGGTAGGCTTCAGAATCTGTATT 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TCGTAACCAGTTTTACTTTGGTGATGGAGTTTCAGAAAGGTAGGCTTCAGAATCTGTATT 499
Query 488 GGAAGAGAGACGGGTGTGCTTCGTGCAAAGGGAATCAAAATTTTGTGTGTCTTAACAAGC 547
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 500 GGAAGAGAGACGGGTGTGCGTCGTGTAAAGGGAATCAAAATTTTGTGTGTCTTAATAAGC 559
Query 548 AAGATTGTGCGATAAGAACACCGAGCTGTAAAGGCCGGGGAGGTTCGGTGGATTGCAGTC 607
|||||||||||||||||||||||||||||||||| ||||||||| | ||||| || ||||
Sbjct 560 AAGATTGTGCGATAAGAACACCGAGCTGTAAAGGTCGGGGAGGTGCCGTGGACTGTAGTC 619
Query 608 TCGGGATTCAGTTGGCGTTTTCCGGCACTGATAAGCACTTGGCGGTTCTCAACTCGTGGT 667
||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 620 TCGGGATACAGCTGGCGTTTTCCGGGACTGATAAGCACTTGGCGGTTCTCAACTCGTGGT 679
Query 668 ATGAAGTTGAGAATCTTAAGCAGTATTCTCTTTATGGTTTGTATTCAAACCTCAAGAGCT 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 ATGAAGTTGAGAATCTTAAGCAGTATTCTCTTTATGGTTTGTATTCAAACCTCAAGAGCT 739
Query 728 CTTTAACCAATCAGTTCAATAATTTCTTCTGA 759
|||||||||||||||||||||||||||| |||
Sbjct 740 CTTTAACCAATCAGTTCAATAATTTCTTTTGA 771
> AT3G48630.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G44150.1);
Has 64 Blast hits to 64 proteins in 15 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18018226-18018808
REVERSE LENGTH=421
Length=421
Score = 272 bits (147), Expect = 3e-72
Identities = 172/184 (93%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 577 AAAGGCCGGGGAGGTTCGGTGGATTGCAGTCTCGGGATTCAGTTGGCGTTTTCCGGCACT 636
||||||||||||||||| |||| || ||||| ||||||||| |||||||||||||||||
Sbjct 182 AAAGGCCGGGGAGGTTCAGTGGGCTGTAGTCTTGGGATTCAGCTGGCGTTTTCCGGCACT 241
Query 637 GATAAGCACTTGGCGGTTCTCAACTCGTGGTATGAAGTTGAGAATCTTAAGCAGTATTCT 696
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 242 GATAAGCACTTGGCGGTTCTCAACTCGTGGTATGAAGTTGATAATCTTAAGCAGTATTCT 301
Query 697 CTTTATGGTTTGTATTCAAACCTCAAGAGCTCT-TTAACCAATCAGTTCAATAATTTCTT 755
|||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||||
Sbjct 302 CTTTATGGTTTGTATTCAAACCTCAAGAGCTCACTTA-CAAATCAGCTCAATAATTTCTT 360
Query 756 CTGA 759
||||
Sbjct 361 CTGA 364
Score = 226 bits (122), Expect = 3e-58
Identities = 143/153 (93%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 355 TAT-ATGGTGGCATTTGCGGGTCGAAAATATGCAGCGAGGTCTATACCGGCTTTTATTGC 413
||| ||| ||||| | |||||||| ||||| ||||||||||| || ||||||||||||||
Sbjct 30 TATAATGTTGGCACTCGCGGGTCGGAAATACGCAGCGAGGTCGAT-CCGGCTTTTATTGC 88
Query 414 TAACAGCACGTTTATCGTAACCAGTTTTACTTTGGTGATGGAGTTTCAGAAAGGTAGGCT 473
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 89 TAACAGCACGTTTATCGTAACCAGTTTTACTTGGGTGATGGAGTTTCAGAAAGGTAGGCT 148
Query 474 TCAGAATCTGTATTGGAAGAGAGACGGGTGTGC 506
|||||||||||||||||||||||||| ||||||
Sbjct 149 TCAGAATCTGTATTGGAAGAGAGACGTGTGTGC 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5