BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg897179 Length=594 Score E Sequences producing significant alignments: (Bits) Value AT3G44235.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 726 0.0 > AT3G44235.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22150.1); Has 20 Blast hits to 20 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15933284-15933963 FORWARD LENGTH=600 Length=600 Score = 726 bits (393), Expect = 0.0 Identities = 538/606 (89%), Gaps = 18/606 (3%) Strand=Plus/Plus Query 1 ATGTCGTGGTCTCAAATT-ACACCTCGTGATCCCAATTTAACGACTTGGTCTCAAAT--T 57 |||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGTCGTGGTCTCAAATTGA-ACCTCGTGATCCTAATTTAACGACTTGGTCTCAAATAAC 59 Query 58 A-CATCTCGTGATCCCAATGC-A--ACGACTGAAGATGGAGACGGAGACGGGGAGAGAGA 113 | ||||||||||||| ||| | | ||||||||||||| ||||||||| || |||| ||| Sbjct 60 ATCATCTCGTGATCCAAATTCAACGACGACTGAAGATGAAGACGGAGATGGCGAGATAGA 119 Query 114 CCATCCTCTTCGAAATTATTGTATAATGTACGTAGTACTACTCGATATTTTTGGTTTTTG 173 ||||||| ||||||||||||||| |||||||||| |||| ||| ||| |||||||||||| Sbjct 120 CCATCCTATTCGAAATTATTGTAGAATGTACGTAATACTGCTCTATACTTTTGGTTTTTG 179 Query 174 GTTGTTTGTGTTGATAGGGCTAATCAACATTAGCAGATGTTACTTAGACCTATTCGTCGA 233 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GTTGTATCTGTTGATAGGGCTAATCAACATTAGCAGATGTTACTTAGACCTATTCGTCGA 239 Query 234 CTCTGTCTCTGTCTCCAACAACACGAACTGGAGCGTCTCATTGGTTGCTGATAGTCCTTT 293 ||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 240 CTCTGTCTCCGTCTCCAACAATACGAACTGGAACGTCTCATTGGTTGCTGATAGTCCTTT 299 Query 294 CACATTTTGTCAATTGTCTCTCTTCACAGTTAACGGCCATCTCCTCCAGGGAGTCGCCTT 353 |||||||||||| || ||||||||||||||||||||||| ||| | || ||||||| ||| Sbjct 300 CACATTTTGTCAGTTATCTCTCTTCACAGTTAACGGCCAACTCTTACAAGGAGTCGGCTT 359 Query 354 CACCACGCGGAAGCTAGATGG-AGTAAAAGAAGGCCATGTGATTTGGGACACCGCGGTCA 412 |||||||||||||||||| | | ||||||| ||||||||| |||||||||||| ||||| Sbjct 360 CACCACGCGGAAGCTAGACAGCA-TAAAAGATGGCCATGTGGTTTGGGACACCGGGGTCA 418 Query 413 AGATCATTGCCCGCATTGAAGTGGGTACAAGTCTTAAGAAAAATGGATTGTTGAGGGTGA 472 |||||||||||||| | ||| ||| || |||||||| ||||| |||||||||||||||| Sbjct 419 AGATCATTGCCCGCGTCCAAGCGGGCACTAGTCTTAAAAAAAAGGGATTGTTGAGGGTGA 478 Query 473 C-GTGCAGTGATTTGCCGGTAAGGTTT-TGGTTGGATCCAGAACGGAATATGAAGGGATC 530 | | |||||||||||||||| |||||| || |||||||||||| |||| ||||| ||||| Sbjct 479 CAG-GCAGTGATTTGCCGGTTAGGTTTCTG-TTGGATCCAGAAGGGAACATGAAAGGATC 536 Query 531 GTTGGTCGGAAACCGGAAACGTTGC-AATTACTTATTTAAGAGCAGTTTGGATCAAT-CC 588 ||||||||||||| ||||||||| ||| |||| ||||| ||||| |||||| ||| || Sbjct 537 GTTGGTCGGAAACATGAAACGTTGTGAAT-ACTTGTTTAACAGCAGCTTGGAT-AATTCC 594 Query 589 CGTTAG 594 | |||| Sbjct 595 CTTTAG 600 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28583229643 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5