BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897179

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44235.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   726    0.0  


> AT3G44235.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G22150.1); 
Has 20 Blast hits to 20 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15933284-15933963 
FORWARD LENGTH=600
Length=600

 Score =  726 bits (393),  Expect = 0.0
 Identities = 538/606 (89%), Gaps = 18/606 (3%)
 Strand=Plus/Plus

Query  1    ATGTCGTGGTCTCAAATT-ACACCTCGTGATCCCAATTTAACGACTTGGTCTCAAAT--T  57
            |||||||||||||||||| | |||||||||||| |||||||||||||||||||||||   
Sbjct  1    ATGTCGTGGTCTCAAATTGA-ACCTCGTGATCCTAATTTAACGACTTGGTCTCAAATAAC  59

Query  58   A-CATCTCGTGATCCCAATGC-A--ACGACTGAAGATGGAGACGGAGACGGGGAGAGAGA  113
            | ||||||||||||| ||| | |  ||||||||||||| ||||||||| || |||| |||
Sbjct  60   ATCATCTCGTGATCCAAATTCAACGACGACTGAAGATGAAGACGGAGATGGCGAGATAGA  119

Query  114  CCATCCTCTTCGAAATTATTGTATAATGTACGTAGTACTACTCGATATTTTTGGTTTTTG  173
            ||||||| ||||||||||||||| |||||||||| |||| ||| ||| ||||||||||||
Sbjct  120  CCATCCTATTCGAAATTATTGTAGAATGTACGTAATACTGCTCTATACTTTTGGTTTTTG  179

Query  174  GTTGTTTGTGTTGATAGGGCTAATCAACATTAGCAGATGTTACTTAGACCTATTCGTCGA  233
            ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  GTTGTATCTGTTGATAGGGCTAATCAACATTAGCAGATGTTACTTAGACCTATTCGTCGA  239

Query  234  CTCTGTCTCTGTCTCCAACAACACGAACTGGAGCGTCTCATTGGTTGCTGATAGTCCTTT  293
            ||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct  240  CTCTGTCTCCGTCTCCAACAATACGAACTGGAACGTCTCATTGGTTGCTGATAGTCCTTT  299

Query  294  CACATTTTGTCAATTGTCTCTCTTCACAGTTAACGGCCATCTCCTCCAGGGAGTCGCCTT  353
            |||||||||||| || ||||||||||||||||||||||| ||| | || ||||||| |||
Sbjct  300  CACATTTTGTCAGTTATCTCTCTTCACAGTTAACGGCCAACTCTTACAAGGAGTCGGCTT  359

Query  354  CACCACGCGGAAGCTAGATGG-AGTAAAAGAAGGCCATGTGATTTGGGACACCGCGGTCA  412
            ||||||||||||||||||  | | ||||||| ||||||||| |||||||||||| |||||
Sbjct  360  CACCACGCGGAAGCTAGACAGCA-TAAAAGATGGCCATGTGGTTTGGGACACCGGGGTCA  418

Query  413  AGATCATTGCCCGCATTGAAGTGGGTACAAGTCTTAAGAAAAATGGATTGTTGAGGGTGA  472
            |||||||||||||| |  ||| ||| || |||||||| ||||| ||||||||||||||||
Sbjct  419  AGATCATTGCCCGCGTCCAAGCGGGCACTAGTCTTAAAAAAAAGGGATTGTTGAGGGTGA  478

Query  473  C-GTGCAGTGATTTGCCGGTAAGGTTT-TGGTTGGATCCAGAACGGAATATGAAGGGATC  530
            | | |||||||||||||||| |||||| || |||||||||||| |||| ||||| |||||
Sbjct  479  CAG-GCAGTGATTTGCCGGTTAGGTTTCTG-TTGGATCCAGAAGGGAACATGAAAGGATC  536

Query  531  GTTGGTCGGAAACCGGAAACGTTGC-AATTACTTATTTAAGAGCAGTTTGGATCAAT-CC  588
            |||||||||||||  |||||||||  ||| |||| ||||| ||||| |||||| ||| ||
Sbjct  537  GTTGGTCGGAAACATGAAACGTTGTGAAT-ACTTGTTTAACAGCAGCTTGGAT-AATTCC  594

Query  589  CGTTAG  594
            | ||||
Sbjct  595  CTTTAG  600



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28583229643


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5