BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897183
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44240.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 773 0.0
> AT3G44240.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr3:15940184-15940903 FORWARD
LENGTH=720
Length=720
Score = 773 bits (418), Expect = 0.0
Identities = 569/643 (88%), Gaps = 5/643 (1%)
Strand=Plus/Plus
Query 1 ATGAGTTTGATCGAAGATTGTCTACGAAACTACCGTTTCATTGCAATCGACACAGAGTTT 60
|||||||| || |||||||||||| ||| |||||||||||||||||| ||||||||||||
Sbjct 1 ATGAGTTTAATAGAAGATTGTCTAAGAAGCTACCGTTTCATTGCAATAGACACAGAGTTT 60
Query 61 CCAGGTTCTTTAAGACAAACTTCACAAGACGCAACAGACGACGAACGTTACAACGACATG 120
||| | |||| || ||||| ||||| | || ||||| || |||||||||| || |||
Sbjct 61 CCATCTACTTTGAGGGAAACTACACAACATGCGACAGATGAGGAACGTTACATGGATATG 120
Query 121 AGCTTTAGTGTCGACAGAACAAAACTGATCCAGTTAGGTCTTACTCTGTTCGACATCAAT 180
|| |||||||| |||||| ||||| ||||||||||||| || ||||||||||| ||||||
Sbjct 121 AGTTTTAGTGTGGACAGAGCAAAATTGATCCAGTTAGGGCTAACTCTGTTCGATATCAAT 180
Query 181 GGAAGAATTGGAGGAACTTGGGAAATCAATTTCTCAGATTTCGGAGTTGACGATGCTAGA 240
||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 181 GGAAGAATTGGAGGAACATGGGAGATCAATTTCTCTGATTTCGGAGTTGACGATGCTAGA 240
Query 241 AACGAGAAATCCATCGAGTTCCTTAGGCGCAACGGTCTTGATCTGAGGAAGATTAGAGAA 300
|||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 241 AACGAGAAATCCATTGAGTTCCTTAGACGCAACGGTCTAGATCTAAGGAAGATTAGAGAA 300
Query 301 GAAGGTATCGGAATCAAGGGTTTTTTCTCGGAGCTGTTTTGGATTTTGAAGAAGACGAGG 360
|| || ||| ||||| ||||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 301 GAGGGCATCAGAATCGAGGGTTTCTTCTCGGAGATGTTTTGGATGCTGAAGAAGACGAGG 360
Query 361 A--A-TATCACTTGGGTCACGTTTCATGGATATTACGATATCGCTTATTTACTCAAGTGT 417
| | ||| |||||||||||||||||||||| |||||| ||||| |||||||||||| ||
Sbjct 361 AGGAATATTACTTGGGTCACGTTTCATGGATCTTACGACATCGCCTATTTACTCAAGGGT 420
Query 418 TTCACCGGAGAAGATTTACCCTTT-ACTTCAGAGAGGTTTTCGAAAGCAGTGGCGAGAAT 476
||||||||||||| |||||| | | ||||||||||||||||| ||||| || |||||| |
Sbjct 421 TTCACCGGAGAAGCTTTACC-TGTGACTTCAGAGAGGTTTTCTAAAGCGGTCGCGAGAGT 479
Query 477 TCTCGGTTCTGTTTATGATTTGAAAGTCATGGCTGGTCGATGCCTAGGACTAAGTAGCAG 536
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 480 TCTCGGTTCTGTTTACGATTTGAAAGTCATGGCGGGTCGATGTGAAGGACTAAGTAGCAG 539
Query 537 ACTTGGTTTGGAGAGTCTAGCTCATGAGTTGGGACTTAACCGTGTTGGTACTGCACACCA 596
||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 540 GCTTGGTTTGGAGACTCTAGCGCATGAGTTCGGACTTAACCGTGTTGGTACTGCACACCA 599
Query 597 CGCGGGTTCGGATAGCGAATTAACGGCTAGGGTTTTCGCTAAG 639
||| ||||| ||| ||| |||||||| | |||||||||||||
Sbjct 600 CGCCGGTTCCAATAACGAGTTAACGGCGATGGTTTTCGCTAAG 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5