BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897197
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44350.2 | Symbols: anac061, NAC061 | NAC domain containing ... 697 0.0
AT5G22380.1 | Symbols: anac090, NAC090 | NAC domain containing ... 250 1e-65
> AT3G44350.2 | Symbols: anac061, NAC061 | NAC domain containing
protein 61 | chr3:16022836-16024487 REVERSE LENGTH=726
Length=726
Score = 697 bits (377), Expect = 0.0
Identities = 412/429 (96%), Gaps = 1/429 (0%)
Strand=Plus/Plus
Query 3 GGAGGAAGAGCTTCCCGTAGGGTTTCGGTTCTATCCGACAGAAGTAGAGCTTCTTACGTA 62
||| ||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 4 GGA-GAAGAGCTTTCTGTAGGGTTTCGGTTCTATCCGACCGAAGTAGAGCTCCTTACGTA 62
Query 63 TTACCTAAGAATCCAGCTTGGTGGAGGAAATGCCACCATTCACAGTCTCATACCGATCCT 122
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 63 TTACCTAAGAATCCAGCTTGGTGGAGGAAATGCCACCATTCATAGTCTCATACCGATCCT 122
Query 123 CGATGTGTTTAGCGTTGAGCCTACGCAGCTTCCAAATCTTGCGGGAGAGAGGTGTCGAGG 182
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 123 CGATGTGTTTAGCGTTGAGCCTACTCAGCTTCCAAATCTTGCGGGAGAGAGGTGTCGAGG 182
Query 183 AGACGCAGAACAATGGCTTTTCTTCGTGCCAAGACAAGAGCGGGAAGCTAGAGGAGGAAG 242
||| |||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 183 AGATGCAGAACAATGGATTTTCTTTGTGCCAAGACAAGAGCGTGAAGCTAGAGGAGGCAG 242
Query 243 ACCGAGTAGGACCACTGGTTCAGGATACTGGAAAGCAACTGGTTCACCAGGCCCCGTGTT 302
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 243 ACCAAGTAGGACCACTGGTTCAGGATACTGGAAAGCAACTGGTTCACCTGGACCCGTGTT 302
Query 303 CTCGCCGGATAACCGAGTGATCGGAGTTAAGAAGACGATGGTTTTCTATACCGGAAAAGC 362
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 303 CTCGCCGGATAACCGAGTGATCGGAGTAAAGAAGACGATGGTTTTCTATACCGGAAAAGC 362
Query 363 ACCTACTGGGAGAAAGACAAAGTGGAAGATGAATGAATACAAAGCAGTTGAAACAGCCAG 422
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 363 ACCTACTGGGAGAAAGACAAAGTGGAAGATGAATGAATATAAAGCAGTTGAAACAGCCAG 422
Query 423 TGTATCTAC 431
|||||||||
Sbjct 423 TGTATCTAC 431
Score = 407 bits (220), Expect = 8e-113
Identities = 240/250 (96%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 450 AAAGTCAGGAAGCTCGAGAGCCTTTGACAGACGTCCCACAGAAGCTTATGCGATAGAGAG 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AAAGTCAGGAAGCTCGAGAGCCTTTGACAGACGTCCCACAGAAGCTTATGCGATAGAGAG 536
Query 510 AACGCTTCCTAGCCATGGAGTTGAGACATCATCTCGTGCCACATTATCCACCTCACCAGA 569
|| ||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 537 AAATCTTCCTAGCAATGGAGTTGAGACATCATCTCGTGCCACAATATCAACCTCACCAGA 596
Query 570 AACTTCACATTCAGGAGGAAACCAAGTTGATTTACCGGAAAATGCTACTACTATTACACA 629
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 597 AACTTCACATTCAGGAGGAAACCAAGTTGATTTACCGGTGAATGCTACTACTATTACACA 656
Query 630 AAGCATCTCAGATATGGTTGATGGGCTATCACAACCTTTTTGGGAATGGGAACAAATGAA 689
||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 657 AAGCATCTCAGATATGGTTGATGAGCTATCGCAACCTTTTTGGGAGTGGGAACAAATGAA 716
Query 690 TTGGTCTTAA 699
||||||||||
Sbjct 717 TTGGTCTTAA 726
> AT5G22380.1 | Symbols: anac090, NAC090 | NAC domain containing
protein 90 | chr5:7408777-7410102 REVERSE LENGTH=919
Length=919
Score = 250 bits (135), Expect = 1e-65
Identities = 317/403 (79%), Gaps = 19/403 (5%)
Strand=Plus/Plus
Query 22 GGGTTTCGGTTCTATCCGACAGAAGTAGAGCTTCTTACGTAT-TACCTAAGAATCCAGCT 80
|||||||| |||||||| || |||| ||| || || ||| | |||||| ||| ||||||
Sbjct 86 GGGTTTCGCTTCTATCCCACGGAAGAAGAACTGGTTTCGT-TCTACCTACGAAACCAGCT 144
Query 81 TGGTGG-AGGA--AATGCCACCATTCA-CAGTCTCA-TACCGATCCTCGATGTGTTT-AG 134
| || |||| ||| | | || || | || ||| | ||| | || || || ||| ||
Sbjct 145 CGAAGGAAGGAGTGATGACTCAATGCATC-GTGTCATTCCCG-TACTTGACGTCTTTGAG 202
Query 135 CGTTGAGCCTACG-CAGCTTCCAAATCTTGCGGGAGAGAGGTGTCGAGGAGACGCAGAAC 193
|| ||||||| | || ||||||||| |||| |||| ||| |||||||||||||| || |
Sbjct 203 -GTCGAGCCTA-GTCATCTTCCAAATGTTGCTGGAGTGAGATGTCGAGGAGACGCTGAGC 260
Query 194 AATGGCTT-TTCTTCGTGCCAAGACAAGAGCGGGAAGCTAGAGGAGGAAGACCGAGTAGG 252
||||| || |||||||||||| ||||||| || ||||| |||||||| |||||||||||
Sbjct 261 AATGG-TTCTTCTTCGTGCCACGACAAGAACGCGAAGCAAGAGGAGGCAGACCGAGTAGA 319
Query 253 ACCACTGGTTCAGGATACTGGAAAGCAACTGGTTCACCAGGCCCCGTGTTCTCGCCG-GA 311
|| ||||||||||||||||||||||||||||| ||||| || || || || || | ||
Sbjct 320 ACTACTGGTTCAGGATACTGGAAAGCAACTGGATCACCTGGTCCAGTCTTTTC-CAAAGA 378
Query 312 TAACCGAGTGATCGGAGTTAAGAAGACGATGGTTTTCTATACCGGAAAAGCACCTACTGG 371
||| | |||| |||| ||||| || ||||||||||| || ||||||||||| || ||
Sbjct 379 CAACAAAATGATTGGAGCAAAGAAAACTATGGTTTTCTACACTGGAAAAGCACCCACAGG 438
Query 372 GAGAAAGAC-AAAGTGGAAGATGAATGAATACAAAGCAGTTGA 413
||||| || ||| ||||| |||||||| ||| | || |||||
Sbjct 439 AAGAAAAACTAAA-TGGAAAATGAATGAGTACCACGCCGTTGA 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5