BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897211
Length=588
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27999.1 | Symbols: | Plant invertase/pectin methylesterase... 412 1e-114
AT4G03945.1 | Symbols: | Plant invertase/pectin methylesterase... 392 2e-108
AT1G11593.1 | Symbols: | Plant invertase/pectin methylesterase... 385 3e-106
AT1G50325.1 | Symbols: | Plant invertase/pectin methylesterase... 93.5 2e-18
> AT3G27999.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:10402872-10403511 FORWARD
LENGTH=640
Length=640
Score = 412 bits (223), Expect = 1e-114
Identities = 443/546 (81%), Gaps = 27/546 (5%)
Strand=Plus/Plus
Query 13 GTCGATAAAAACTTTTCACCAGCTTGTTTACTGGTTTTACTTCTTTTTGTTGTCTCATCA 72
|||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||
Sbjct 27 GTCGATAAAAACTTTTCATTGGCTTGTTTTTTGGTTTTACTTCTTTTTGTTGACTCATCG 86
Query 73 TATGCAAAGTTTAGTACCATGGTTACAACAGATGAGATCCGCACCTTATGCACCAAAGCA 132
||||||| ||||| ||| ||||||||| |||| |||||| |||| ||||||||||| ||
Sbjct 87 TATGCAAGGTTTAATACGTTGGTTACAAAAGATCAGATCCACACCATATGCACCAAA-CA 145
Query 133 GGTG-TCAAATCTTCATTGTGTTTTGAGGTTCTAAA-AGCAACTCCTGAAATTGCTAGAC 190
| | |||| |||||||| |||||| | |||||||| | ||| |||||||||||||| |
Sbjct 146 AGAGATCAATTCTTCATTTTGTTTTCAAGTTCTAAATA-CAAATCCTGAAATTGCTAAAT 204
Query 191 TAGATTTTTCTGGTCTCGCCAAATATT-TGATTAATTATCATGCTCAAAATATTTCGGAT 249
|||||||| || ||||| ||||| || || |||||||||| ||||||||||||||||||
Sbjct 205 TAGATTTTCCTAGTCTCTTCAAAT-TTGTGCTTAATTATCAGGCTCAAAATATTTCGGAT 263
Query 250 ACGCTGAAGCAATTTAAATTATCAGGAGGCTATATACCGGATATTGATTCTGAATATCGC 309
||||||||||||||||| |||||||||||||| || |||||| |||| ||| ||||| ||
Sbjct 264 ACGCTGAAGCAATTTAAGTTATCAGGAGGCTACATGCCGGATGTTGAATCTCAATATAGC 323
Query 310 TTATGTAAAGAATTATATAAAGATGCTCTCGACAAAT-GTCCTTATG-CCCTCAAATATT 367
||||| | |||||||||| | ||||| |||| || | || | || |||||| |||||
Sbjct 324 TTATGCATAGAATTATATGGATATGCTTTCGATAA-TCGTGAT-ATTACCCTCAGATATT 381
Query 368 TGGCTGCCAAAGACTATTACAACTTCAA-ATTTATGGT-AGCTCAAACGATGGGAGATAT 425
| ||||||||||||||| ||| | | || | | | ||| || | |||| ||| ||||||
Sbjct 382 TAGCTGCCAAAGACTATAACAGCGTAAACACT-AGGGTCAG-TGGAACGTTGGAAGATAT 439
Query 426 GAATAAT-TGTATTTATGATGAGTTGTCAACAATGAAGCCAGTACCACAATTTTTTATAA 484
| | | |||| | ||||| |||||||||||||||||| |||||||||||||||| |
Sbjct 440 -ATTTACGTGTACTGATGAT---TTGTCAACAATGAAGCCAATACCACAATTTTTTATGA 495
Query 485 CGAAAACTAATGAT-ATTCAAGAAATTGGT-TACT-TTATCATAGT-ATTTGTCGATTGT 540
|| ||| |||| | ||| ||||| ||| | || || || |||| ||| |||| |||
Sbjct 496 CGGAAAGTAATT-TGATTAAAGAA-TTG-TCTAAGATTCTCTTAGTGATTC-TCGAATGT 551
Query 541 TTCATA 546
||||||
Sbjct 552 TTCATA 557
> AT4G03945.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr4:1877872-1878545 FORWARD
LENGTH=674
Length=674
Score = 392 bits (212), Expect = 2e-108
Identities = 419/518 (81%), Gaps = 18/518 (3%)
Strand=Plus/Plus
Query 1 ATGGTTGTTTATGTCGATAAAAACTTTTCACCAGCTTGTTTACTGGTTTTACTTCTTTTT 60
||||||| ||| |||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 17 ATGGTTGCTTACGTCGATAAAAACTTTTCATTGGCTTGTTTTTTGGTTTTACTTCTTTTT 76
Query 61 GTTGTCTCATCATATGCAAAGTTTAGTACCATGGTTACAACAGATGAGATCCGCACCTTA 120
|||| |||||| ||||||| ||||| ||| ||||||||| |||| |||||| |||| ||
Sbjct 77 GTTGACTCATCGTATGCAAGGTTTAATACGTTGGTTACAAAAGATCAGATCCACACCATA 136
Query 121 TGCACCAAAGC-AGGTGTCAAATCTTCAT-TGTGTTTTGAGGTTCTAAAAGCAACTCCTG 178
||||||||| | || | |||| ||||||| | |||||| | |||||||| |||| |||||
Sbjct 137 TGCACCAAA-CAAGATATCAATTCTTCATAT-TGTTTTCAAGTTCTAAACGCAAATCCTG 194
Query 179 AAATTGCTAGACTAGATTTTTCTGGTCTCGCCAAATATT-TGATTAATTATCATGCTCAA 237
||||||||||| |||||||| || ||||| ||||| || || |||||||||| ||||||
Sbjct 195 AAATTGCTAGATTAGATTTTCCTAGTCTCTTCAAAT-TTGTGCTTAATTATCAGGCTCAA 253
Query 238 AATATTTCGGATACGCTGAAGCAATTTAAATTATCAGGAGGCTATATACCGGATATTGAT 297
|||||||| |||| |||||||||||||||||||||||||||||| | |||| | ||||
Sbjct 254 AATATTTCAGATAAGCTGAAGCAATTTAAATTATCAGGAGGCTACACGCCGGGTGTTGAA 313
Query 298 TCTGAATATCGCTTATGTAAAGAATTATAT-AAAGATGCTCTCGACAAATGTCCTTATGC 356
||| ||||| |||||||| |||||| ||| ||| || || ||||| || | | ||
Sbjct 314 TCTAAATATAACTTATGTATAGAATTTTATGAAA-ATTCTTTCGACCGGCGTGATGAAGC 372
Query 357 CCTCAAATATTTGGCTGCCAAAGACTATTACAACTTCAA-ATTTATGGTAGCTCAAACGA 415
||||| |||||||||||||||||||||| || | | || | | ||||| | | ||||
Sbjct 373 CCTCAGATATTTGGCTGCCAAAGACTATGGCAGCGTAAACACT-ATGGTCGGTGGAACGG 431
Query 416 TGGGAGATATGAAT-AATTGTATTTATGATGAGTTGTCAACAATGAAGCCAGTACCACAA 474
| | ||||| | || ||| | ||||| |||||||||||||||||||||||||||
Sbjct 432 CGATAAATATGT-TCAACTGTGCTGATGAT---TTGTCAACAATGAAGCCAGTACCACAA 487
Query 475 TTTTTTATAACGAAAACTAATGAT-ATTCAAGAAATTG 511
|||||| | ||| ||| |||| | ||| ||||| |||
Sbjct 488 TTTTTTGTGACGGAAAGTAATT-TGATTAAAGAA-TTG 523
> AT1G11593.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:3898002-3898609 FORWARD
LENGTH=608
Length=608
Score = 385 bits (208), Expect = 3e-106
Identities = 411/506 (81%), Gaps = 25/506 (5%)
Strand=Plus/Plus
Query 1 ATGGTTGTTTATGTCGATAAAAACTTTTCACCAGCTTGTTTACTGGTTTTACTTCTTTTT 60
||||||| ||| |||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1 ATGGTTGCTTACGTCGATAAAAACTTTTCATTGGCTTGTTTTTTGGTTTTACTTCTTTTT 60
Query 61 GTTGTCTCATCATATGCAAAGTTTAGTACCATGGTTACAACAGATGAGATCCGCACCTTA 120
|||| |||||| ||||||| ||||| || ||||||||| |||| |||||| ||| ||
Sbjct 61 GTTGACTCATCGTATGCAAGGTTTAATATGTTGGTTACAAAAGATCAGATCCACACAATA 120
Query 121 TGCACCAAAGC-AGGTGTCAAATCTTCAT-TGTGTTTTGAGGTTCTAAAAGCAACTCCTG 178
||||||||| | || | |||| ||||||| | |||||| | |||||||| |||| |||||
Sbjct 121 TGCACCAAA-CAAGATATCAATTCTTCATAT-TGTTTTCAAGTTCTAAACGCAAATCCTG 178
Query 179 AAATTGCTAGACTAGATTTTTCTGGTCTCGCCAAATATT-TGATTAATTATCATGCTCAA 237
||||||||||| |||||||| || ||||| ||||| || || |||||||||| ||||||
Sbjct 179 AAATTGCTAGATTAGATTTTCCTAGTCTCTTCAAAT-TTGTGCTTAATTATCAGGCTCAA 237
Query 238 AATATTTCGGATACGCTGAAGCAATTTAAATTATCAGGAGGCTATATACCGGATATTGAT 297
||||||||||||||||||||||| ||||||||||||||||| || | |||| | ||||
Sbjct 238 AATATTTCGGATACGCTGAAGCAGTTTAAATTATCAGGAGGTTACACGCCGGGTGTTGAA 297
Query 298 TCTGAATATCGCTTATGTA-AAGAATTATATAAAGATG--CTCTCGACAAAT-GTCCT-- 351
||| ||||| ||||||| | || |||||||| |||| || |||| || | || |
Sbjct 298 TCTCAATATAGCTTATGCATAA-AATTATATG--GATGGGCTTTCGATAA-TCGTGATAG 353
Query 352 TATGCCCTCAAATATTTGGCTGCCAAAGACTATTACAACTTCAA--ATTTATGGTAGCTC 409
||| || ||| |||||||||||||||||||||| ||| | | || | | ||| | | |
Sbjct 354 TAT-CC-TCAGATATTTGGCTGCCAAAGACTATAACAGCGT-AAGCACT-ATGATCGGTG 409
Query 410 AAACGATGGGAGATATGAATAATTGTATTTATGATGAGTTGTCAACAATGAAGCCAGTAC 469
|||| ||| ||||||| || |||| | ||||| ||||||||||||||||||||||
Sbjct 410 GAACGTTGGAAGATATGTTTACGTGTACTGATGAT---TTGTCAACAATGAAGCCAGTAC 466
Query 470 CACAATTTTTTATAACGAAAACTAAT 495
||||||||||||| ||| ||| ||||
Sbjct 467 CACAATTTTTTATGACGGAAAGTAAT 492
> AT1G50325.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:18639874-18640488 REVERSE
LENGTH=615
Length=615
Score = 93.5 bits (50), Expect = 2e-18
Identities = 153/201 (76%), Gaps = 14/201 (7%)
Strand=Plus/Plus
Query 46 GTTTTACTTCTTTTTGTTGTCTCATCATATGCAA-AGTTTAGTACCATGGTTACAACAGA 104
|||||||||||||||||||||||||||||||||| | |||| ||| | ||||||||||||
Sbjct 55 GTTTTACTTCTTTTTGTTGTCTCATCATATGCAAGA-TTTAATACGAAGGTTACAACAGA 113
Query 105 TGAGATCCGCACCTTATGC--AC-CAAAGCAGGTGTCAAAT-CTTCATTGTGTTTTGAGG 160
||| || | | | ||| || || ||||| | ||| | | ||||| || | ||||
Sbjct 114 TGAAATATGTGGCATGTGCGCACGCAGAGCAG-T--CAA-TGCGTCATTTTGCTATGAG- 168
Query 161 TTC-TAAAAGCAACTC-CTGAAATTGCTAGACTAGATTTTTCTGGTCTCGCCAAATATTT 218
||| | ||| || | | || || |||| | | | ||| || || ||||||||||| |||
Sbjct 169 TTCATGAAATCATC-CACTCAAGTTGCAACATTGGATACTTATGATCTCGCCAAATTTTT 227
Query 219 GATTAATTATCATGCTCAAAA 239
||| |||||| || ||||||
Sbjct 228 GATCAATTATGATTTTCAAAA 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28281824761
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5