BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897212
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27999.1 | Symbols: | Plant invertase/pectin methylesterase... 315 7e-85
AT4G03945.1 | Symbols: | Plant invertase/pectin methylesterase... 276 3e-73
AT1G11593.1 | Symbols: | Plant invertase/pectin methylesterase... 272 4e-72
> AT3G27999.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:10402872-10403511 FORWARD
LENGTH=640
Length=640
Score = 315 bits (170), Expect = 7e-85
Identities = 353/439 (80%), Gaps = 22/439 (5%)
Strand=Plus/Plus
Query 469 TTTAGTACCATGGTTACAACAGATGAGATCCGCACCTTATGCACCAAAGCAGGTG-TCAA 527
|||| ||| ||||||||| |||| |||||| |||| ||||||||||| || | | ||||
Sbjct 96 TTTAATACGTTGGTTACAAAAGATCAGATCCACACCATATGCACCAAA-CAAGAGATCAA 154
Query 528 ATCTTCATTGTGTTTTGAGGTTCTAAA-AGCAACTCCTGAAATTGCTAAACTAGAttttt 586
|||||||| |||||| | |||||||| | ||| |||||||||||||||| ||||||||
Sbjct 155 TTCTTCATTTTGTTTTCAAGTTCTAAATA-CAAATCCTGAAATTGCTAAATTAGATTTTC 213
Query 587 ttGGTCTCGCCAAATATT-TGATCAATTATCATGCTCAAAATATTTCGGATACGCTGAAG 645
| ||||| ||||| || || | |||||||| |||||||||||||||||||||||||||
Sbjct 214 CTAGTCTCTTCAAAT-TTGTGCTTAATTATCAGGCTCAAAATATTTCGGATACGCTGAAG 272
Query 646 CAATTTAAATTATCAGGAGGCTATATACCGGATATTGATTCTGAATATCGCTTATGTAAA 705
|||||||| |||||||||||||| || |||||| |||| ||| ||||| ||||||| | |
Sbjct 273 CAATTTAAGTTATCAGGAGGCTACATGCCGGATGTTGAATCTCAATATAGCTTATGCATA 332
Query 706 GAATTATATAAAGATGCTCTCGACAAAT-GTCCTTATG-CCCTCAAATATTTGGCTGCCA 763
||||||||| | ||||| |||| || | || | || |||||| |||||| |||||||
Sbjct 333 GAATTATATGGATATGCTTTCGATAA-TCGTGAT-ATTACCCTCAGATATTTAGCTGCCA 390
Query 764 AAGACTATTACAACTTCAA-ATTTATGGT-AGCTCAAACGATGGGAGATATGAATAAT-T 820
|||||||| ||| | | || | | | ||| || | |||| ||| |||||| | | | |
Sbjct 391 AAGACTATAACAGCGTAAACACT-AGGGTCAG-TGGAACGTTGGAAGATAT-ATTTACGT 447
Query 821 GTATTTATGATGAGTTGTCAACAATGAAGCCAGTACCACAATTTTTTATAACTAAAACTA 880
||| | ||||| |||||||||||||||||| |||||||||||||||| || ||| ||
Sbjct 448 GTACTGATGAT---TTGTCAACAATGAAGCCAATACCACAATTTTTTATGACGGAAAGTA 504
Query 881 ATGAT-ATTCAAGAAATTG 898
|| | ||| ||||| |||
Sbjct 505 ATT-TGATTAAAGAA-TTG 521
> AT4G03945.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr4:1877872-1878545 FORWARD
LENGTH=674
Length=674
Score = 276 bits (149), Expect = 3e-73
Identities = 344/437 (79%), Gaps = 18/437 (4%)
Strand=Plus/Plus
Query 469 TTTAGTACCATGGTTACAACAGATGAGATCCGCACCTTATGCACCAAAGC-AGGTGTCAA 527
|||| ||| ||||||||| |||| |||||| |||| ||||||||||| | || | ||||
Sbjct 98 TTTAATACGTTGGTTACAAAAGATCAGATCCACACCATATGCACCAAA-CAAGATATCAA 156
Query 528 ATCTTCAT-TGTGTTTTGAGGTTCTAAAAGCAACTCCTGAAATTGCTAAACTAGAttttt 586
||||||| | |||||| | |||||||| |||| |||||||||||||| | ||||||||
Sbjct 157 TTCTTCATAT-TGTTTTCAAGTTCTAAACGCAAATCCTGAAATTGCTAGATTAGATTTTC 215
Query 587 ttGGTCTCGCCAAATATT-TGATCAATTATCATGCTCAAAATATTTCGGATACGCTGAAG 645
| ||||| ||||| || || | |||||||| |||||||||||||| |||| |||||||
Sbjct 216 CTAGTCTCTTCAAAT-TTGTGCTTAATTATCAGGCTCAAAATATTTCAGATAAGCTGAAG 274
Query 646 CAATTTAAATTATCAGGAGGCTATATACCGGATATTGATTCTGAATATCGCTTATGTAAA 705
||||||||||||||||||||||| | |||| | |||| ||| ||||| |||||||| |
Sbjct 275 CAATTTAAATTATCAGGAGGCTACACGCCGGGTGTTGAATCTAAATATAACTTATGTATA 334
Query 706 GAATTATAT-AAAGATGCTCTCGACAAATGTCCTTATGCCCTCAAATATTTGGCTGCCAA 764
||||| ||| ||| || || ||||| || | | ||||||| |||||||||||||||
Sbjct 335 GAATTTTATGAAA-ATTCTTTCGACCGGCGTGATGAAGCCCTCAGATATTTGGCTGCCAA 393
Query 765 AGACTATTACAACTTCAA-ATTTATGGTAGCTCAAACGATGGGAGATATGAAT-AATTGT 822
||||||| || | | || | | ||||| | | |||| | | ||||| | || |||
Sbjct 394 AGACTATGGCAGCGTAAACACT-ATGGTCGGTGGAACGGCGATAAATATGT-TCAACTGT 451
Query 823 ATTTATGATGAGTTGTCAACAATGAAGCCAGTACCACAATTTTTTATAACTAAAACTAAT 882
| ||||| ||||||||||||||||||||||||||||||||| | || ||| ||||
Sbjct 452 GCTGATGAT---TTGTCAACAATGAAGCCAGTACCACAATTTTTTGTGACGGAAAGTAAT 508
Query 883 GAT-ATTCAAGAAATTG 898
| ||| ||||| |||
Sbjct 509 T-TGATTAAAGAA-TTG 523
> AT1G11593.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:3898002-3898609 FORWARD
LENGTH=608
Length=608
Score = 272 bits (147), Expect = 4e-72
Identities = 330/415 (80%), Gaps = 25/415 (6%)
Strand=Plus/Plus
Query 479 TGGTTACAACAGATGAGATCCGCACCTTATGCACCAAAGC-AGGTGTCAAATCTTCAT-T 536
||||||||| |||| |||||| ||| ||||||||||| | || | |||| ||||||| |
Sbjct 92 TGGTTACAAAAGATCAGATCCACACAATATGCACCAAA-CAAGATATCAATTCTTCATAT 150
Query 537 GTGTTTTGAGGTTCTAAAAGCAACTCCTGAAATTGCTAAACTAGAtttttttGGTCTCGC 596
|||||| | |||||||| |||| |||||||||||||| | |||||||| | |||||
Sbjct 151 -TGTTTTCAAGTTCTAAACGCAAATCCTGAAATTGCTAGATTAGATTTTCCTAGTCTCTT 209
Query 597 CAAATATT-TGATCAATTATCATGCTCAAAATATTTCGGATACGCTGAAGCAATTTAAAT 655
||||| || || | |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 210 CAAAT-TTGTGCTTAATTATCAGGCTCAAAATATTTCGGATACGCTGAAGCAGTTTAAAT 268
Query 656 TATCAGGAGGCTATATACCGGATATTGATTCTGAATATCGCTTATGTA-AAGAATTATAT 714
|||||||||| || | |||| | |||| ||| ||||| ||||||| | || ||||||||
Sbjct 269 TATCAGGAGGTTACACGCCGGGTGTTGAATCTCAATATAGCTTATGCATAA-AATTATAT 327
Query 715 AAAGATG--CTCTCGACAAAT-GTCCT--TATGCCCTCAAATATTTGGCTGCCAAAGACT 769
|||| || |||| || | || | ||| || ||| ||||||||||||||||||||
Sbjct 328 G--GATGGGCTTTCGATAA-TCGTGATAGTAT-CC-TCAGATATTTGGCTGCCAAAGACT 382
Query 770 ATTACAACTTCAA--ATTTATGGTAGCTCAAACGATGGGAGATATGAATAATTGTATTTA 827
|| ||| | | || | | ||| | | | |||| ||| ||||||| || |||| | |
Sbjct 383 ATAACAGCGT-AAGCACT-ATGATCGGTGGAACGTTGGAAGATATGTTTACGTGTACTGA 440
Query 828 TGATGAGTTGTCAACAATGAAGCCAGTACCACAATTTTTTATAACTAAAACTAAT 882
|||| ||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 441 TGAT---TTGTCAACAATGAAGCCAGTACCACAATTTTTTATGACGGAAAGTAAT 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5