BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897231

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G42050.1 | Symbols:  | vacuolar ATP synthase subunit H famil...   538    1e-152


> AT3G42050.1 | Symbols:  | vacuolar ATP synthase subunit H family 
protein | chr3:14228495-14233245 REVERSE LENGTH=1900
Length=1900

 Score =  538 bits (291),  Expect = 1e-152
 Identities = 363/397 (91%), Gaps = 7/397 (2%)
 Strand=Plus/Plus

Query  1    ATGGATCATGCAGAACTAACTTTAGAGCAGGTATTGAAAAGAGACATACCATGGGAGACT  60
            |||||||| || || || | | ||||||||||||||||||| ||||| ||||||||||||
Sbjct  224  ATGGATCAGGCGGAGCTGAGTATAGAGCAGGTATTGAAAAGGGACATTCCATGGGAGACT  283

Query  61   TACATG-ACAACTAAGCTGATTTCAGC-AACAGGTCTCCCGCAT-TTAAGGCGGTACGAT  117
            |||||| || ||||||||| ||||||| || |||||||| || | |||||||| || |||
Sbjct  284  TACATGAAC-ACTAAGCTGGTTTCAGCTAA-AGGTCTCCAGC-TCTTAAGGCGCTATGAT  340

Query  118  AAGAAACCCGAAAGTGCAAGGGCACAGTTGCTGGATGAAGATGGTCCAGCTTATGTTCAT  177
            || ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct  341  AAAAAACCTGAAAGTGCTAGGGCACAGTTGCTCGATGAAGATGGTCCAGCTTATGTTCAT  400

Query  178  CTGTTTGTTAGCATCTTACGTGATATATTCAAGGAAGAAACTGTGGAATATGTCTTGGCT  237
            || ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct  401  CTCTTTGTTAGCATCTTACGTGATATATTCAAGGAAGAAACTGTCGAATATGTTTTGGCT  460

Query  238  TTGATTTATGAAATGCTCTCAGAAAACCCAACACGAGCTCGTTTATTCCATGATAAATCT  297
            |||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||
Sbjct  461  TTGATTTATGAAATGCTCTCAGCAAACCCAACACGAGCTCGATTATTCCATGATGAATCT  520

Query  298  TTGGTACATGAGGATACTTACGAGCCTTTCTTGAGGTTGCTGTGGAAGGGAAATTGGTTC  357
            |||| | ||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  521  TTGGCAAATGAGGATACTTATGAGCCTTTCTTGAGGTTGCTTTGGAAGGGAAATTGGTTC  580

Query  358  ATTCAAGAAAAA-GCTGCAAGATCCTTGCCTGGATAA  393
            |||||||||||| |||| |||||||||||||||||||
Sbjct  581  ATTCAAGAAAAAAGCTGTAAGATCCTTGCCTGGATAA  617



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5