BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897234
Length=438
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44716.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 604 2e-172
> AT3G44716.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 13 Blast hits to 13
proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:16263200-16263875 FORWARD LENGTH=592
Length=592
Score = 604 bits (327), Expect = 2e-172
Identities = 407/444 (92%), Gaps = 12/444 (3%)
Strand=Plus/Plus
Query 1 ATGCAAGAAATTCCCAGCAAGATCCTCCTTCTTCTTCTCCTCTTCTTTCTAATTTTCTCA 60
||||||||||||||||| || ||| |||||||||||||| |||||| ||||||| || ||
Sbjct 31 ATGCAAGAAATTCCCAGAAAAATCGTCCTTCTTCTTCTCTTCTTCTCTCTAATTCTCCCA 90
Query 61 CCTTCCACACAAAACCCACAAGAAGAAATATACTACTGTGGTAAAACTCCAATCTCAAAC 120
||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 91 CCTTCCACACAAAACCCACAAGAAGAAATCTACTACTGTGGTAACACTCTAATCTCAAAC 150
Query 121 CCATCT-AATTTCATAACCTGCAGATCTGGAAAACTCTACTTCAAAACCTCAACTGGTCT 179
|||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 151 CCATCTGAA-CTCATAACCTGCAGATCTGGAAAACTCTACTTCAAAAGCTCAACTGGTCT 209
Query 180 CTTCCATGTCTCTGGAACAGAGGAAGTGAAATTAAGAGCTAGAGTTTCTATGGAAGTCGA 239
|||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 210 CTTCCATGTCTCCGGAACAGAGGAAGTGAAATTAAGAGCTAGGGTGTCTATGGAAGTCGA 269
Query 240 AGGTCACATACCAGATTTATGCATCGCTTGTGAGAGACC-AGATGGTAACTGTGGTGCTG 298
|||||||||||| || ||||||||||||||||||||||| | | ||||||||||||| ||
Sbjct 270 AGGTCACATACCGGACTTATGCATCGCTTGTGAGAGACCTA-AGGGTAACTGTGGTGTTG 328
Query 299 CTCTAAGATGTCTTTGTCATCCTAAAGAATGCAAGAATAAAGTTATCAACTTTGGAACCA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 CTCTAAGATGTCTTTGTCATCCTAAAGAATGCAAGAATAAAGTTATCAACTTTGGAACCA 388
Query 359 AGTCTCGAGCTTTTTCTGGTAACA-ACATACAGAAGCTTCTTCCACTATTATCGTTG--G 415
||||||||||||| ||||||||| ||| |||| ||||||||||| || | |||| |
Sbjct 389 AGTCTCGAGCTTTATCTGGTAACTTACA-ACAG---CTTCTTCCACTTTTGTTGTTGTTG 444
Query 416 -CTTTGTTTCTTATCTGTTTTTGA 438
|| ||||||||||||||||||||
Sbjct 445 GCTATGTTTCTTATCTGTTTTTGA 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20810848086
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5