BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897235

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44717.1 | Symbols:  | Pseudogene of AT5G03495; nucleotide b...   202    2e-51
  AT5G03480.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   185    2e-46


> AT3G44717.1 | Symbols:  | Pseudogene of AT5G03495; nucleotide 
binding protein | chr3:16264449-16264931 REVERSE LENGTH=483
Length=483

 Score =  202 bits (109),  Expect = 2e-51
 Identities = 136/149 (91%), Gaps = 2/149 (1%)
 Strand=Plus/Plus

Query  34   GCATTGAGAAAACATTTCTCTTCATGCGGAAAGATCAAACATATCTATGTTCCAAGAGAC  93
            |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct  72   GCATTGAGAAAACACTTCTCTTCATGCGGAAAGATCAAACATATTTATGTTCCTAGAGAC  131

Query  94   TTTGAAA-GTGGTACCCTCAAGAGAGTTGCTTTCATGAGGATTGAGGGAGAAGGTGCCGA  152
            ||||||| | |||||| ||||||| ||| | |||||||||||||||||| ||||||| ||
Sbjct  132  TTTGAAAAG-GGTACCATCAAGAGTGTTTCCTTCATGAGGATTGAGGGAAAAGGTGCTGA  190

Query  153  AGACAAGGCATTGGAACTTAGTGGAACTG  181
            ||| || ||||||||||||||||||||||
Sbjct  191  AGAGAAAGCATTGGAACTTAGTGGAACTG  219


> AT5G03480.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:869208-870855 REVERSE LENGTH=966
Length=966

 Score =  185 bits (100),  Expect = 2e-46
 Identities = 144/165 (87%), Gaps = 4/165 (2%)
 Strand=Plus/Plus

Query  37   TTGAGAAAACATTTCTCTTCATGCGGAAAGATCAAACATATCTATGTTCCAAGAGACTTT  96
            |||| |||||||||| ||||||||||| |||||| ||| || ||||||||||||||||||
Sbjct  130  TTGACAAAACATTTCGCTTCATGCGGAGAGATCACACAAATTTATGTTCCAAGAGACTTT  189

Query  97   GAAAGTG-GTACCCTCAAGAGAGT-TGCTTTCATGAGGATTGAGGGAGAAGGTGCCGAAG  154
             |||  |   | ||||||||| || | | |||||| ||||  ||||||||||||||||||
Sbjct  190  -AAAAAGAAAATCCTCAAGAGTGTCT-CCTTCATGTGGATCAAGGGAGAAGGTGCCGAAG  247

Query  155  ACAAGGCATTGGAACTTAGTGGAACTGACGTGGGAGGATGGACTG  199
            ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  248  ACAAGGCATTGCAACTTAGTGGAACTGACGTGGGAGGATGGACTG  292


 Score =  182 bits (98),  Expect = 3e-45
 Identities = 138/158 (87%), Gaps = 0/158 (0%)
 Strand=Plus/Plus

Query  42   AAAACATTTCTCTTCATGCGGAAAGATCAAACATATCTATGTTCCAAGAGACTTTGAAAG  101
            ||||||||||  |||||||||| |||| | |||| | |||||||| | ||||| ||||||
Sbjct  402  AAAACATTTCGATTCATGCGGAGAGATTAGACATGTTTATGTTCCCACAGACTATGAAAG  461

Query  102  TGGTACCCTCAAGAGAGTTGCTTTCATGAGGATTGAGGGAGAAGGTGCCGAAGACAAGGC  161
             |||  ||||||||| ||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct  462  GGGTGTCCTCAAGAGTGTTGCCTTCTTGAGGATCGAGGGAGAAGGTGCCGAAGACAAGGC  521

Query  162  ATTGGAACTTAGTGGAACTGACGTGGGAGGATGGACTG  199
            |||| ||||||||||||||||||| | |||||||||||
Sbjct  522  ATTGCAACTTAGTGGAACTGACGTTGTAGGATGGACTG  559



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5