BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897239
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44735.1 | Symbols: PSK1, ATPSK3, PSK3 | PHYTOSULFOKINE 3 PR... 377 2e-104
> AT3G44735.1 | Symbols: PSK1, ATPSK3, PSK3 | PHYTOSULFOKINE 3
PRECURSOR | chr3:16291194-16292152 REVERSE LENGTH=474
Length=474
Score = 377 bits (204), Expect = 2e-104
Identities = 216/222 (97%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 31 GTTCTCTTCCTCATTTTATCAACAAGCTCATCTGCAATTCGAAGAGGAAAAGAAGATCCA 90
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 59 GTTCTCTTCCTCATTTTATCAACAAGTTCATCTGCAATTCGAAGAGGAAAAGAAGATCAA 118
Query 91 GAGATAAATCCATTAGTTTCAGCTACACCAGTGGAAGAGGACTCAGTTAATAAATTGATG 150
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 119 GAGATAAATCCATTAGTTTCAGCTACATCAGTGGAAGAGGACTCAGTTAATAAATTGATG 178
Query 151 GGAATGGAATATTGTGGAGAAGGAGATGAAGAATGTTTGAAGAGAAGGATGATGACGGAA 210
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 179 GGGATGGAATATTGTGGAGAAGGAGATGAAGAATGTTTGAGGAGAAGGATGATGACGGAA 238
Query 211 TCTCACTTAGACTACATTTACACACAGCACCATAAGCATTGA 252
|||||||||||||| |||||||||||||||||||||||||||
Sbjct 239 TCTCACTTAGACTATATTTACACACAGCACCATAAGCATTGA 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11461046772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5