BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897242
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44770.1 | Symbols: | Protein of unknown function (DUF626) ... 963 0.0
> AT3G44770.1 | Symbols: | Protein of unknown function (DUF626)
| chr3:16316080-16319458 FORWARD LENGTH=1518
Length=1518
Score = 963 bits (521), Expect = 0.0
Identities = 594/630 (94%), Gaps = 1/630 (0%)
Strand=Plus/Plus
Query 192 TCTGGGTTTCGATATTGATGGTAATGTTCGTATCCCAGCATGTGGAATCTCACCAGTCTT 251
||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 445 TCT-GGTTTCGATATTGATGGTAAAGTTTGTATCCCAGCATGTGGAATCTCACCAGTCTT 503
Query 252 TCTAGGTGCTAATGAAAACCCGCGTAGCGAAATCGCTCTTTATGGCCGTTTGGGAGTTCA 311
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 504 TCTAGGTGCTAATAAAAACCCGCGTAGCGAAGTCGCTCTTTATGGCCGTTTGGGAGTTCA 563
Query 312 TTGCTTCAACATTGACAAGGAGAGGAAGTTGAAGTATATGCGCATACCTAAATACAATAT 371
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 564 TTGCTTCAACATTGACAAGGAGAGGAAGTTTCAGTATATGCGCATACCTAAATACAATGT 623
Query 372 TCAATTTCCTAAAGCTATGTCTTTCTATATAACCGTGGAGGTGAAAGATCTTGCTGATAA 431
||||| |||| |||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 624 TCAATATCCTGAAGCTATGTCTTTCCATATAACCGTGGAGGTGAATGATCTTGCTGATAA 683
Query 432 TTCAGCTCACACTTTACAGACCTTGGTCATAAGATCTTTCTCTAGGAATGGAGAGCACTT 491
|||||||||||||||||||| |||||||| ||||||||| |||||||| |||||| ||||
Sbjct 684 TTCAGCTCACACTTTACAGAACTTGGTCACAAGATCTTTTTCTAGGAACGGAGAGGACTT 743
Query 492 AAGAGTCTCTACTGGAATTTGCAGAATCAAACCCGAAACACCTGAAGGAGATATCTGTCT 551
|||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct 744 AAGAGTCTCTACTGGAATTTGCAGAATCAAACCCAAAACACCTGAAAGAGAGATCTGTCT 803
Query 552 TGTGGATGAGAAAGCAATAGATAAGTTTTACAGAGGTGTTATGCCCAACTTTGTGTCCAA 611
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TGTGGATGAGGAAGCAATAGATAAGTTTTACAGAGGTGTTATGCCCAACTTTGTGTCCAA 863
Query 612 ACAAGGAGCTGTCAATGATAAGCTGAGATTCTATGAGGTTCAGGAGCAGGACATATGTGC 671
|| ||| |||| | ||||||||||||| ||||| |||||||||||||||||| |||||||
Sbjct 864 ACTAGGGGCTGACGATGATAAGCTGAGGTTCTACGAGGTTCAGGAGCAGGACGTATGTGC 923
Query 672 AAATGATTGGCTACGTCTATATACTGAATTTGCACTTTTTTCCTTCTGGAGATATAATGA 731
|||||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||
Sbjct 924 AAATGATTGGTTACGTCTATATACTGAATTCGCACTTTTCTCCTACTGGAGATATAATGA 983
Query 732 GGACGGATTTGAGTCTTGTTTACCTGTGGAGATCAAGAAGATAATTGTGGAGACTTGTGA 791
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 984 GGACGGATTTGAGTCTTGTTTACCTGTGGAGATCAAGAAGATAATTGTGGAAACTTGTGA 1043
Query 792 AACTCATAGAGAGCCGCGTCTGAAGCTGAA 821
||||| |||||||||||| ||||||||||
Sbjct 1044 CACTCACAGAGAGCCGCGTATGAAGCTGAA 1073
Score = 278 bits (150), Expect = 9e-74
Identities = 168/177 (95%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 20 AGCTGTTGGATAGTGGAAAATTATCAGACGAAACCTGCCACTCGATTTTGTGTGGATTGA 79
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 229 AGCTGTTGGATTGTGGAAAATTATCTGACGAAACCTGCCACTCGATTTTGTGTGGATTGG 288
Query 80 GTAAACATGTCGATGCTTTTCATTTATCCAAAACCGAAGAAGAAGTCGATGGATGGACAT 139
|| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 289 GTCAACATGTCGATGCTTTACATTTATCCAAAACCGAAGAAGAAGTCGACGGATGGACAT 348
Query 140 CTGAGGAAGATGAACAACTTGACGAAGAATACTGTCGCCAAGTTACCCAGTCTCTGG 196
|||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 349 CTGAGGAAGATGAAGAACTTGACCAAGAATACTGTCGCCAAGTTACCGAGTCTCTGG 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5