BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg897248

Length=693
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44770.1 | Symbols:  | Protein of unknown function (DUF626) ...   228    7e-59


> AT3G44770.1 | Symbols:  | Protein of unknown function (DUF626) 
| chr3:16316080-16319458 FORWARD LENGTH=1518
Length=1518

 Score =  228 bits (123),  Expect = 7e-59
 Identities = 300/381 (79%), Gaps = 29/381 (8%)
 Strand=Plus/Plus

Query  292  GCTCTTTATGGCCGTTTGGGAGTTCATTGTTTCAACTTTGAGAAGGGGAGGAA-TCTGCG  350
            ||||||||||||||||||||||||||||| |||||| |||| |||| |||||| | | | 
Sbjct  538  GCTCTTTATGGCCGTTTGGGAGTTCATTGCTTCAACATTGACAAGGAGAGGAAGTTT-CA  596

Query  351  GTTTATCCGCATACCCAAATACAAT-TCCCAA-ATCCATCAAACTGAC-TCTTACTC-TA  406
            || ||| |||||||| ||||||||| | | || |||| | || || |  |||| | | ||
Sbjct  597  GTATATGCGCATACCTAAATACAATGTTC-AATATCC-TGAAGCT-ATGTCTTTC-CATA  652

Query  407  TAACCGTGGAGGTGGAGGATCTTGCAGATTGTTC-GCCTCACATTTTTCAGACCTTGGTC  465
            |||||||||||||| | |||||||| |||  ||| || ||||| ||| |||| |||||||
Sbjct  653  TAACCGTGGAGGTGAATGATCTTGCTGATAATTCAGC-TCACACTTTACAGAACTTGGTC  711

Query  466  ACAAGGT-TGTTTCCCAAGAATGGTGAGGGCTTAAGAGTCTTTACTGGAATCTGCAGACT  524
            ||||| | | ||||  | ||| || |||| ||||||||||| ||||||||| |||||| |
Sbjct  712  ACAAGATCTTTTTCT-AGGAACGGAGAGGACTTAAGAGTCTCTACTGGAATTTGCAGAAT  770

Query  525  TAAACCCGCGACACCAGGTAAAG-GAGATGCCTATGCTATATTGGATGAGGAAGCAATAG  583
             ||||||   ||||| |  |||| ||||| | | | || | | |||||||||||||||||
Sbjct  771  CAAACCCAAAACACCTG--AAAGAGAGAT-C-TGT-CT-TGT-GGATGAGGAAGCAATAG  823

Query  584  ATG-GTTTTTACAGAGGCGATATGCTGGACTTTGTGTCGGAAGCAATAG-CTGATGATGA  641
            ||  ||||| ||||||| | |||||   ||||||||||  || | |  | |||| |||||
Sbjct  824  ATAAGTTTT-ACAGAGGTGTTATGCCCAACTTTGTGTCCAAA-CTAGGGGCTGACGATGA  881

Query  642  ---GCTGAGATTCTACGAGGT  659
               |||||| |||||||||||
Sbjct  882  TAAGCTGAGGTTCTACGAGGT  902



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33556410196


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5