BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg897250 Length=984 Score E Sequences producing significant alignments: (Bits) Value AT3G44770.1 | Symbols: | Protein of unknown function (DUF626) ... 357 1e-97 > AT3G44770.1 | Symbols: | Protein of unknown function (DUF626) | chr3:16316080-16319458 FORWARD LENGTH=1518 Length=1518 Score = 357 bits (193), Expect = 1e-97 Identities = 445/560 (79%), Gaps = 44/560 (8%) Strand=Plus/Plus Query 281 CTCTTTATGGTCGCTTGGGAGTTCATTGTTTCAACTTTGAGAAGG-GCAGGAA-TTTACT 338 |||||||||| || |||||||||||||| |||||| |||| |||| | ||||| ||| | Sbjct 539 CTCTTTATGGCCGTTTGGGAGTTCATTGCTTCAACATTGACAAGGAG-AGGAAGTTT-C- 595 Query 339 GGT-TATGCGAATACCTAAATACAATATTGAGCT-TGTTCAAACTAGGGCTTACTATATA 396 || |||||| ||||||||||||||| || | | | | || ||| | ||| | ||||| Sbjct 596 AGTATATGCGCATACCTAAATACAATGTTCA-ATATCCTGAAGCTATGTCTTTCCATATA 654 Query 397 ACAATGGAGGTGGAA-GATCTTGCTGATAATTCGTCGGTTCACATTTTTCAGACCTTGGT 455 || ||||||| ||| |||||||||||||| | || | ||||| ||| |||| |||||| Sbjct 655 ACCGTGGAGGT-GAATGATCTTGCTGATAA-T--TCAGCTCACACTTTACAGAACTTGGT 710 Query 456 GACAAGATGTTTTCCCAGGAAC--A-ACGCATCCTT-AGTAGTCTTTACCGGAATCTGCA 511 ||||||| |||| | |||||| | | | | ||| || ||||| ||| ||||| |||| Sbjct 711 CACAAGATCTTTTTCTAGGAACGGAGA-GGA--CTTAAG-AGTCTCTACTGGAATTTGCA 766 Query 512 GACTTAAACCCGAGATACCAGGTG-AAG-GAGATGCTGATGCTCGGTTGGATGAGAAAGC 569 || | |||||| | | | || || ||| ||||| ||| | || | |||||||| |||| Sbjct 767 GAATCAAACCC-A-A-AACACCTGAAAGAGAGAT-CTG-T-CT-TG-TGGATGAGGAAGC 818 Query 570 AATATATGAGTTTTACAAAGGCT-CTATGCCTGACTTTTTGTCCGAGAC-A-AAACT--T 624 |||| || ||||||||| ||| | |||||| ||||| ||||| | || | || Sbjct 819 AATAGATAAGTTTTACAGAGG-TGTTATGCCCAACTTTGTGTCC-AAACTAGGGGCTGAC 876 Query 625 GATGATAAGCTGAGATTCTACGAGGTTCAGGAGCAGGATATATGTGAAAATGATTGGCTT 684 |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| || Sbjct 877 GATGATAAGCTGAGGTTCTACGAGGTTCAGGAGCAGGACGTATGTGCAAATGATTGG-TT 935 Query 685 -CGTCTATATACCGAATTTGCACTTTTCTGCTTTTGGTGGTTTAATGAGGATGGATTTAA 743 ||||||||||| ||||| |||||||||| || ||| | | ||||||||| |||||| | Sbjct 936 ACGTCTATATACTGAATTCGCACTTTTCTCCTACTGGAGATATAATGAGGACGGATTTGA 995 Query 744 GT-TTAGTTTGCCTGTGGAGATCAAGAAGATAATTGTGGAAACTTGTGAAACTGATAGAG 802 || || |||| |||||||||||||||||||||||||||||||||||||| ||| | |||| Sbjct 996 GTCTT-GTTTACCTGTGGAGATCAAGAAGATAATTGTGGAAACTTGTGACACTCACAGAG 1054 Query 803 AGCCGTGTCAT-AAGCTGAA 821 ||||| || || |||||||| Sbjct 1055 AGCCGCGT-ATGAAGCTGAA 1073 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48174546973 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5