BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897250
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44770.1 | Symbols: | Protein of unknown function (DUF626) ... 357 1e-97
> AT3G44770.1 | Symbols: | Protein of unknown function (DUF626)
| chr3:16316080-16319458 FORWARD LENGTH=1518
Length=1518
Score = 357 bits (193), Expect = 1e-97
Identities = 445/560 (79%), Gaps = 44/560 (8%)
Strand=Plus/Plus
Query 281 CTCTTTATGGTCGCTTGGGAGTTCATTGTTTCAACTTTGAGAAGG-GCAGGAA-TTTACT 338
|||||||||| || |||||||||||||| |||||| |||| |||| | ||||| ||| |
Sbjct 539 CTCTTTATGGCCGTTTGGGAGTTCATTGCTTCAACATTGACAAGGAG-AGGAAGTTT-C- 595
Query 339 GGT-TATGCGAATACCTAAATACAATATTGAGCT-TGTTCAAACTAGGGCTTACTATATA 396
|| |||||| ||||||||||||||| || | | | | || ||| | ||| | |||||
Sbjct 596 AGTATATGCGCATACCTAAATACAATGTTCA-ATATCCTGAAGCTATGTCTTTCCATATA 654
Query 397 ACAATGGAGGTGGAA-GATCTTGCTGATAATTCGTCGGTTCACATTTTTCAGACCTTGGT 455
|| ||||||| ||| |||||||||||||| | || | ||||| ||| |||| ||||||
Sbjct 655 ACCGTGGAGGT-GAATGATCTTGCTGATAA-T--TCAGCTCACACTTTACAGAACTTGGT 710
Query 456 GACAAGATGTTTTCCCAGGAAC--A-ACGCATCCTT-AGTAGTCTTTACCGGAATCTGCA 511
||||||| |||| | |||||| | | | | ||| || ||||| ||| ||||| ||||
Sbjct 711 CACAAGATCTTTTTCTAGGAACGGAGA-GGA--CTTAAG-AGTCTCTACTGGAATTTGCA 766
Query 512 GACTTAAACCCGAGATACCAGGTG-AAG-GAGATGCTGATGCTCGGTTGGATGAGAAAGC 569
|| | |||||| | | | || || ||| ||||| ||| | || | |||||||| ||||
Sbjct 767 GAATCAAACCC-A-A-AACACCTGAAAGAGAGAT-CTG-T-CT-TG-TGGATGAGGAAGC 818
Query 570 AATATATGAGTTTTACAAAGGCT-CTATGCCTGACTTTTTGTCCGAGAC-A-AAACT--T 624
|||| || ||||||||| ||| | |||||| ||||| ||||| | || | ||
Sbjct 819 AATAGATAAGTTTTACAGAGG-TGTTATGCCCAACTTTGTGTCC-AAACTAGGGGCTGAC 876
Query 625 GATGATAAGCTGAGATTCTACGAGGTTCAGGAGCAGGATATATGTGAAAATGATTGGCTT 684
|||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 877 GATGATAAGCTGAGGTTCTACGAGGTTCAGGAGCAGGACGTATGTGCAAATGATTGG-TT 935
Query 685 -CGTCTATATACCGAATTTGCACTTTTCTGCTTTTGGTGGTTTAATGAGGATGGATTTAA 743
||||||||||| ||||| |||||||||| || ||| | | ||||||||| |||||| |
Sbjct 936 ACGTCTATATACTGAATTCGCACTTTTCTCCTACTGGAGATATAATGAGGACGGATTTGA 995
Query 744 GT-TTAGTTTGCCTGTGGAGATCAAGAAGATAATTGTGGAAACTTGTGAAACTGATAGAG 802
|| || |||| |||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 996 GTCTT-GTTTACCTGTGGAGATCAAGAAGATAATTGTGGAAACTTGTGACACTCACAGAG 1054
Query 803 AGCCGTGTCAT-AAGCTGAA 821
||||| || || ||||||||
Sbjct 1055 AGCCGCGT-ATGAAGCTGAA 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5