BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897251
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44780.1 | Symbols: | Cysteine proteinases superfamily prot... 776 0.0
> AT3G44780.1 | Symbols: | Cysteine proteinases superfamily protein
| chr3:16321601-16322604 REVERSE LENGTH=647
Length=647
Score = 776 bits (420), Expect = 0.0
Identities = 548/609 (90%), Gaps = 11/609 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGAACTTCCTATTAAAGTTGAGATTCTATACGAATCCGATCAACTCTTTTCAGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAACTTCCTATTAAAGTTGAGATTCTATACGAATCCGATCAACTCTTTTCAGAA 60
Query 61 CTAAAGAAGATTGGACAATACATCCCACTTTCAACATTTCTCGAGATTCTAAAACTTGAA 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CTAAAGAAGATTGGACAGTACATCCCACTTTCAACATTTCTCGAGATTCTAAAACTAAAA 120
Query 121 CCTGATGGAAAATTTGAGATACTCAGAGTGAAGAAAAAAGTAGTGAAACCTAAGGTAGAA 180
| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 121 CTTGACGGAAAATTTGAGATACTCAGAGTGAAGAACAAAGTAGTGAAACCTAAAGTAGAG 180
Query 181 GGTGAAAATA-T--TGTAGTC-GCACAGGGAAGAGGCGATTCCAGAGAAGTAGTGCCCGA 236
||||||| || | ||| ||| ||| | ||| | || || ||| |||| ||
Sbjct 181 GGTGAAACTATTGATGTTGTCTACACTCGCTTGAGAAAACACC--AG--GTATTGCCTGA 236
Query 237 TGAAACGAAGAAGGTGGACTGGGGACCTTTTTATGGTCCGGTGAAAGATCAGGGAGAACA 296
|||||| ||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 237 TGAAACAAAGAAGGCGGACTGGGGACCTTTTAATGGTCCGATGAAAGATCAGGGAGAACA 296
Query 297 CGATATATGTTGGGCCATTGTGACGGCTGAATTAGTCACTGCAATACGGTGGATCAAACA 356
||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 297 CGATATATGTTGGGCGATCGTGACGGCTGAATTAGTCACTGCGATACGGTGGATCAAACA 356
Query 357 ACGTGAAAACGGGACTGAGTACTCGTATCAAGAGCTTGTAGATTTTGTGTTTCCGGAGAA 416
|| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 357 ACATGAAAACGGGACTGAGTACTTGTATCAAGAGCTTGTAGATTTTGTGTTTCCCGAGAA 416
Query 417 GGGAAAGCTTCGAAACAATAAGGCGCATTTCTGTTATAGGCTCAGCATCTTAAAAGCCTT 476
|||||||| | ||| |||||||| ||||||||||||| |||||||||| ||||||| ||
Sbjct 417 AGGAAAGCTGCAAAAAAATAAGGCACATTTCTGTTATAAGCTCAGCATCGTAAAAGCTTT 476
Query 477 GAGGTATGTTGTTCAACAAGGTATTCAAAAAGCAGTTGACCGGCCTTTCGATGGGTGCAA 536
|||||||||||||| ||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 477 GAGGTATGTTGTTCGACAAGGTATTCAAAAAGCACTAGATCGGCCTTTCGATGGGTGCAA 536
Query 537 AGAGTTTCCACCACCTCGGGTTTTATCCAATCCCCACCTAGG-G--TATATTGGTGCCGC 593
|||||||||||| |||||||||||||| ||| |||||||||| | |||||| |||||||
Sbjct 537 AGAGTTTCCACCGCCTCGGGTTTTATCGAATTCCCACCTAGGAGGGTATATTTGTGCCGC 596
Query 594 CAAGTCGAT 602
||||| |||
Sbjct 597 CAAGTTGAT 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29186039407
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5