BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg897256
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44790.1 | Symbols: | TRAF-like family protein | chr3:16328... 979 0.0
AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domai... 776 0.0
AT3G44805.1 | Symbols: | TRAF-like superfamily protein | chr3:... 185 6e-46
> AT3G44790.1 | Symbols: | TRAF-like family protein | chr3:16328792-16330265
FORWARD LENGTH=975
Length=975
Score = 979 bits (530), Expect = 0.0
Identities = 855/1003 (85%), Gaps = 57/1003 (6%)
Strand=Plus/Plus
Query 11 AGTTCACTTGGATGATTAAGAACTTCTCATCTAATTTGCAATCTGAGTTA-ATTGATTCT 69
||||||||||| |||||||||| |||||||| |||||||||| || || ||| |||||
Sbjct 14 AGTTCACTTGGGTGATTAAGAATTTCTCATC---TTTGCAATCTAAG-TACATTAATTCT 69
Query 70 GATGAATTTGTGATCGGTGGCTGCAAATGGTTTCTTATGGGAGAACAAAATGATAATTAT 129
||| |||| || ||||||||||||||||||||||||| |||| | || |||| |||||||
Sbjct 70 GATAAATTCGTTATCGGTGGCTGCAAATGGTTTCTTAAGGGATATCAGAATGCTAATTAT 129
Query 130 TTTTCTCTGTTTCTGGTGGTTGCTGATTTTC-AAAA-TTTGCCTTGTGGATGGAGAAGAC 187
|| |||||||||||| |||||||| | ||| |||| |||||||||||||||||||||
Sbjct 130 TTGTCTCTGTTTCTGATGGTTGCT-A-CTTCAAAAACATTGCCTTGTGGATGGAGAAGAT 187
Query 188 ACTCAAGATTTCGTCTAACTGTTGTAAATCAAATTTCCGATAAACTCTCCTTGCATCGAG 247
|| || ||||||| |||||||||||||||||| |||||||| |||| ||| || |
Sbjct 188 ACACACGATTTCGCCTAACTGTTGTAAATCAACTTTCCGATGAACTTTCC---CA---A- 240
Query 248 TTTTGTCTAC-AGAAACAG-AACGATGGTTCGATCAAAAAGTTCCTGT-TCATGGGTATG 304
| || |||||| | ||| |||||| || ||||| ||| | | || |||| ||
Sbjct 241 ------CAACGAGAAACGGAAAC-ATGGTTTGACCAAAACGTTGTTCTCTC-TGGGAAT- 291
Query 305 CAGA-A-ATGATTTCTCTTGCCAAACTAAATGTCAG-A-AAAGGTGGATTTCTTGTGAAC 360
| || | |||||||| ||| ||||||| |||| | | | |||||||||||||||||||||
Sbjct 292 C-GACACATGATTTCCCTTACCAAACTTAATG-C-GAAGAAAGGTGGATTTCTTGTGAAC 348
Query 361 AATGAAGTCAAGATTGTTGTTGAGGTTGATGTTCTTCAAGTTACTGGCAAATTAGATGTT 420
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 349 AATGAAGTCAAGATTGTTGTGGAGGTTGATGTTCTTCAAGTTATTGGCAAATTAGATGTT 408
Query 421 TCTGAGGAATCTCTAG-AGGATACACAAACTTTGAAAAGGATAAAGCTAAAAGGTTACGG 479
|| |||| ||||| || || | || ||| || |||||||||||| |||||| | | | ||
Sbjct 409 TCAGAGGGATCTCAAGAAGTA-ACTCAACCTCTGAAAAGGATAAGGCTAAACGATGATGG 467
Query 480 TGTGGTGTCTAGTCATTTGCATAAGGAAACTTCATCAGTCAATGTCAATGGGTTTCTTGT 539
||| | || || | | || ||| ||| | ||||||||||||||| ||
Sbjct 468 TGT--T-TC-CGT-A-----A-AA-CAAA--GCAT---T-GATGTCAATGGGTTTCAGGT 509
Query 540 TCTTCCTTCTCAGGTGGAATCTGTGAAACGTATATTCGAAAGACACCCAGACATGGCAAT 599
||||||||| ||||||||||| ||||||||||| || |||||||||||| |||||||| |
Sbjct 510 TCTTCCTTCACAGGTGGAATCGGTGAAACGTATCTTTGAAAGACACCCAAACATGGCACT 569
Query 600 AGAGTTCCGAGCAAAGAACAAACATATGAGGACATTATCCATCAACCTCCTCCTCAACAT 659
||||||||||||||||||| ||||| ||||||||| || || || ||||||||| | |
Sbjct 570 AGAGTTCCGAGCAAAGAACCAACATGTGAGGACATCATGTATGAATGTCCTCCTCAGCCT 629
Query 660 AATCGAGACTTTGTGCCAGTCATTGCAAGACTTTTCCATTGATGACCTTTGCCAAGCAGA 719
|||||| || ||||||||||| |||||||| |||||||||||||||| |||| |||||
Sbjct 630 AATCGATACACTGTGCCAGTCACTGCAAGACATTTCCATTGATGACCTGGGCCAGGCAGA 689
Query 720 GAAAGCACTAAGATACCTGAAAGATTCGGACTTTAAGGTGGATTGGTTAGAGCATAAACT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 690 GAAAGCACTAAGATACCTGAAAGATTCGGACTTTAAGGTGGATTGGTTAGAGCGTAAATT 749
Query 780 GGAGGAAGTAAAGGAAAAGAAGATGGAAGAGCAGATTGGTAAGACTCGGGTGCAAGAACT 839
||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 750 GGAGGAAGTGAAGGAAAAGAAGATGGAAGAGCAGATTGGTAAGTCTCGGATGCAAGAACT 809
Query 840 AGAGGAAGACCTGAAGGTCTTCAAGCAGAATTGTTCTGACATAGAAGCTCAACTGGAGAA 899
||||||||| |||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 810 AGAGGAAGAGCTGAAGATCTTCAAGCAGAAGTGCTCTGACATAGAAGCTCAACTGGAGAA 869
Query 900 AGAGAAGCAAAAGTGCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGACAAAGGTA-T 958
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 870 AGAGAAGCAAAAGTGCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGGCAAAG-TCGT 928
Query 959 TGGCCGCTGCCAAAGCTCCTCCTCTAACGTTGGATGATGTTGT 1001
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct 929 TGGCCGCTGCCAGAGCTCCTCCTCTAACGTTGGATGATGTTGT 971
> AT3G44800.1 | Symbols: | Meprin and TRAF (MATH) homology domain-containing
protein | chr3:16343333-16346027 FORWARD LENGTH=1695
Length=1695
Score = 776 bits (420), Expect = 0.0
Identities = 769/927 (83%), Gaps = 66/927 (7%)
Strand=Plus/Plus
Query 13 TTCACTTGGATGATTAAGAACTTCTCATCTAATTTGCAATCTGAGTTA-ATTGATTCTGA 71
||||||||| |||||||||| |||||||| ||||||||||||| || ||| | |||||
Sbjct 16 TTCACTTGGGTGATTAAGAATTTCTCATC---TTTGCAATCTGAG-TACATTAAATCTGA 71
Query 72 TGA-ATTTGTGATCGGTGGCTGCAAAT-G-G---TTT---CT-T----ATGGGAGAACAA 117
| | ||| ||||||||||||||||||| | | ||| || | || ||| ||||
Sbjct 72 T-ATATTCGTGATCGGTGGCTGCAAATGGTGTCTTTTGGCCTATCCCAAT-GGAAAACAG 129
Query 118 AATGATAATTATTTTTCTCTGTTTCTGG-TGGTTGCTGATTTTCAAAA-TTTGCCTTGTG 175
|||| || |||||| ||||||| ||||| ||| | || | ||| |||| |||||||||||
Sbjct 130 AATGCTAGTTATTTGTCTCTGTATCTGGATGG-TCCT-ACTTTAAAAACTTTGCCTTGTG 187
Query 176 GATGGAGAAGACAC-TCAAGATTTCGTCTAACTGTTGTAAATCAAATTTCCGATAAA-CT 233
|||| ||||| | | | ||||||||| |||||||||||||||||| | ||||| ||| ||
Sbjct 188 GATGTAGAAGGCGCAT-AAGATTTCGCCTAACTGTTGTAAATCAACTCTCCGA-AAACCT 245
Query 234 CTCCTTGCATCGAGTTTTGTCTACAGAAACAGAACGATGGTTCGATCAAAAAG-TTCCTG 292
|||| | | |||| | |||| | |||||||||| ||| |||||| |||||
Sbjct 246 CTCC-CG-A-CGAG----G-----AGAAGGAAAACGATGGTTTGAT-AAAAAGCTTCCTC 292
Query 293 T-TCATGGGTATGCAGAAATGATTTC-TCTTGCCAAACTAAATGTCAGAA-AAGGTGGAT 349
| | |||||||| |||| || ||| |||| ||||||| |||| || || | |||||||
Sbjct 293 TGT-GTGGGTATGAAGAAGTG-CTTCTTCTTACCAAACTTAATGCCA-AACATGGTGGAT 349
Query 350 TTCTTGTGAACAATGAAGTCAAGATTGTTGTTGAGGTTGATGTTCTTCAAGTTACTGGCA 409
|||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |||||
Sbjct 350 TTCTTGTGAACAATGAAGTCAAGATTGTTGCGGAGGTAGATGTTCTTGAAGTTATTGGCA 409
Query 410 AATTAGATGTTTCTGAGGAATCTCTAGAGGATACAC-AAACTTTG-AAAAGGATAAAGCT 467
|||||||||||||| ||||||||| ||||| || | |||| | | |||||||| | |||
Sbjct 410 AATTAGATGTTTCTAAGGAATCTCAAGAGG-TA-ATTAAACCTCGGAAAAGGATGAGGCT 467
Query 468 AAAAGGTTACGGTG-TG-G-TGTCTAGTCATTTGCATAAGGAAACTTCATCAGTCA-ATG 523
| | ||| | |||| || | |||||||||||||||| ||||||||||||||||| | |||
Sbjct 468 ATATGGTGATGGTGGTGCGGTGTCTAGTCATTTGCACAAGGAAACTTCATCAGT-AGATG 526
Query 524 TCAATGGGTTTCTTGTTCTTCCTTCTCAGGTGGAATCTGTGAAACGTATATTCGAAAGAC 583
|||||||||||| ||||||||||| |||| |||||||||||| ||||||||||||||||
Sbjct 527 TCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAGCGTATATTCGAAAGAC 586
Query 584 ACCCAGACATGGCAATAGAGTTCCGAGCAAAGAACAAACA-TATGAGGACATTATCCATC 642
||||| |||||||| |||||||||||||||||||| |||| | ||||| ||| || ||
Sbjct 587 ACCCATACATGGCATTAGAGTTCCGAGCAAAGAACCAACAGT-TGAGGGCATCATGTATA 645
Query 643 AACCTCCTCCTCAACATAATCGAGACTTTGTGCCAGTCATTGCAAGACT-TTTCCATTGA 701
|| ||||||||| | ||||| |||| |||||||||||| ||||||| | ||||||||||
Sbjct 646 AATGTCCTCCTCAGCCTAATCAAGACGTTGTGCCAGTCACTGCAAGA-TATTTCCATTGA 704
Query 702 TGACCTTTGCCAAGCAGAGAAAGCACTAAGATACCTG-AAAGATTC-GGACTTTAAGGTG 759
|||||| ||||| ||||| ||| ||||| || |||| ||| |||| ||| |||||||||
Sbjct 705 TGACCTAGGCCAAACAGAGCAAGTACTAACATTCCTGCAAA-ATTCTGGA-TTTAAGGTG 762
Query 760 GATTGGTTAGAGCATAAACTGGAGGAAGTAAAGGAAAAGAAGATGGAAGAGCAGATTGGT 819
|||||| | |||| |||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 763 GATTGGCTGGAGCGTAAACTGGAGGAAGTAAAGGAAAAGAAGATCCAAGAGCACATTGGT 822
Query 820 AAGACTCGGGTGCAAGAACTAGAGGAAGACCTGAAGGTCTTCAAGCAGAATTGTTCTGAC 879
||| ||||| |||||| | |||||||||||||||||||||||||| |||| || ||||||
Sbjct 823 AAGTCTCGGATGCAAGGATTAGAGGAAGACCTGAAGGTCTTCAAGAAGAAGTGCTCTGAC 882
Query 880 ATAGAAGCTCAACTGGAGAAAGAGAAG 906
|||||||||| ||||||||||||||||
Sbjct 883 ATAGAAGCTCTACTGGAGAAAGAGAAG 909
Score = 97.1 bits (52), Expect = 3e-19
Identities = 82/95 (86%), Gaps = 8/95 (8%)
Strand=Plus/Plus
Query 903 GAAGCAAAAGTGCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGACAAAGGTATTGGC 962
|||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||
Sbjct 927 GAAGCAAAAGTGCTCAGACATAGAAGCTCTGCTGGAGAAAGAGAAGGGAAAGGTGTTGGC 986
Query 963 --C-GCTGCCA-AAGCTCCTCCTCTAACGTTGGAT 993
| ||||||| || |||||| | |||||| |||
Sbjct 987 TGCTGCTGCCAGAA-CTCCTC-T--AACGTTAGAT 1017
> AT3G44805.1 | Symbols: | TRAF-like superfamily protein | chr3:16350395-16351437
FORWARD LENGTH=747
Length=747
Score = 185 bits (100), Expect = 6e-46
Identities = 112/118 (95%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 310 ATGATTTCTCTTGCCAAACTAAATGTCAGAAAAGGTGGATTTCTTGTGAACAATGAAGTC 369
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGATTTCTCTTGCCAAACTTAATGTCAGAAAAGGTGGATTTCTTGTGAAAAATGAAGTC 60
Query 370 AAGATTGTTGTTGAGGTTGATGTTCTTCAAGTTACTGGCAAATTAGATGTTTCTGAGG 427
|| |||||||| |||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 61 AAAATTGTTGTGGAGGTTGATGTTCTTCAAGTTATTGGCAACTTAGATGTTTCTGAGG 118
Score = 141 bits (76), Expect = 1e-32
Identities = 126/149 (85%), Gaps = 8/149 (5%)
Strand=Plus/Plus
Query 281 AAAAAGT-TCCTGTTCATGGG-TATGCAGAAATGATTTCT-CTTGCCAAACTAAATGTCA 337
||||| | || || ||||||| || | ||||||| | || ||| || |||| |||| ||
Sbjct 578 AAAAACTCTCTTG-TCATGGGTTA-GAAGAAATG-CTACTCCTTTCCGAACTTAATGCCA 634
Query 338 GAA-AAGGTGGATTTCTTGTGAACAATGAAGTCAAGATTGTTGTTGAGGTTGATGTTCTT 396
|| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 635 -AAGAAGGTGGATTTCTTGTGAACAATGAAGTCAAGATTATTGCAGAGGTAGATGTTCTT 693
Query 397 CAAGTTACTGGCAAATTAGATGTTTCTGA 425
|| |||| |||||||||||||||||||||
Sbjct 694 CAGGTTATTGGCAAATTAGATGTTTCTGA 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5